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The map label for this gene is exbD [H]

Identifier: 154246221

GI number: 154246221

Start: 2540844

End: 2541260

Strand: Reverse

Name: exbD [H]

Synonym: Xaut_2279

Alternate gene names: 154246221

Gene position: 2541260-2540844 (Counterclockwise)

Preceding gene: 154246222

Following gene: 154246220

Centisome position: 47.87

GC content: 65.47

Gene sequence:

>417_bases
ATGGATGAGAAGCCGTTCGAGACCATGAACGTGATCCCGTTCGTGGACATCATGCTGGTGCTGCTGACCATGGTGCTGAC
CACGGCGAGCTTCATCGCGGTGGGCCGGATCCCGGTGAGCCTGGCGCAGGCCGCGCCCATGAAGGTGGAGCAACAGAAGG
ACACCATGATCGAGATCACGGCGGACGGCACCCTGCACCTGGAGGGCGTCGCGCTGTCGGTGGAGGAGCTGAAGGCCCGG
CTCGGCGTGCTGCCGAAGGACACCTCCATCCTGATCCGGGCCGACAAGGCCGTGGCCTTCCAGAGCTTCGTGGACGTGGC
CGACGTGCTGAAGACCCTGGCCTTCACCAAGGTCGGAGTGCAGACCAAAGGCATCGCCGCGGGTGCGGGAACCGCCCCGG
AGGGAACGCTACCATGA

Upstream 100 bases:

>100_bases
GCCTACAACGCGCTGCTACGCCGCGCCAAGGTGCTGATGCTCAGGTGGGAGATCGCCCGCGAGGCGGGTCCCGCCCCGGC
GGCAGTCGGAGCGGCGTCCC

Downstream 100 bases:

>100_bases
GCTTCACCCTCGGCCACGGCCTCGCCGCCTCCCTCGCCTTGCACGGGGCACTCATCCTGCCCTTCGTCGTGGTGCTGGAT
CCGCCGCCGCCGCAGGACAG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MDEKPFETMNVIPFVDIMLVLLTMVLTTASFIAVGRIPVSLAQAAPMKVEQQKDTMIEITADGTLHLEGVALSVEELKAR
LGVLPKDTSILIRADKAVAFQSFVDVADVLKTLAFTKVGVQTKGIAAGAGTAPEGTLP

Sequences:

>Translated_138_residues
MDEKPFETMNVIPFVDIMLVLLTMVLTTASFIAVGRIPVSLAQAAPMKVEQQKDTMIEITADGTLHLEGVALSVEELKAR
LGVLPKDTSILIRADKAVAFQSFVDVADVLKTLAFTKVGVQTKGIAAGAGTAPEGTLP
>Mature_138_residues
MDEKPFETMNVIPFVDIMLVLLTMVLTTASFIAVGRIPVSLAQAAPMKVEQQKDTMIEITADGTLHLEGVALSVEELKAR
LGVLPKDTSILIRADKAVAFQSFVDVADVLKTLAFTKVGVQTKGIAAGAGTAPEGTLP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14609; Mature: 14609

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKPFETMNVIPFVDIMLVLLTMVLTTASFIAVGRIPVSLAQAAPMKVEQQKDTMIEIT
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEE
ADGTLHLEGVALSVEELKARLGVLPKDTSILIRADKAVAFQSFVDVADVLKTLAFTKVGV
CCCEEEEEEEEECHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
QTKGIAAGAGTAPEGTLP
CCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MDEKPFETMNVIPFVDIMLVLLTMVLTTASFIAVGRIPVSLAQAAPMKVEQQKDTMIEIT
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEE
ADGTLHLEGVALSVEELKARLGVLPKDTSILIRADKAVAFQSFVDVADVLKTLAFTKVGV
CCCEEEEEEEEECHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
QTKGIAAGAGTAPEGTLP
CCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]