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The map label for this gene is xpsD [H]

Identifier: 154246049

GI number: 154246049

Start: 2364533

End: 2366836

Strand: Reverse

Name: xpsD [H]

Synonym: Xaut_2106

Alternate gene names: 154246049

Gene position: 2366836-2364533 (Counterclockwise)

Preceding gene: 154246061

Following gene: 154246048

Centisome position: 44.58

GC content: 68.79

Gene sequence:

>2304_bases
GTGGAAGTGCGGAAAGATCGGCCAAACCGGTTCGGCTCCCGACCGGGCACCCTGCTGTTGACGTGCGCGATCCTCATCGC
CACGGCGCTGGCCGCGTGTTCTCTGGTGCCCGACGACGTCAAGCCGCCGAGCGTGATGGACCAGGTCCGCGCCATCGACC
TGCTGCCGCGCGACACCAAGCCGGTGCCCGGCCCGCAGGACATTCCCGACGACCGCAAGGCCATCGAATATTTCGGCTCA
AGCACCGCGGCAGCGGTCTCCGACCGTTCCGAGGTGGGCGTGGCCGGACGGGGCGGCGTGAGCGGCGGCGCGGACGGCTA
TGACCTCAACTTCGACAACACGCCGGTGACCAGCGTCGCCAAGGTGGTGCTGGGCGACATCCTCGGCGTGGGCTACGTCA
TCGACCCGCGGGTGCAGGGCACGGTGACCCTCGCCTCGGCGCGGCCGGTGCCGAAGACCGAGCTGCTGTACGTGCTCGAA
GCCGCGCTGAAGACCAACAACGTGGCCATGGTGCGCGAAGGGGCCGGCTATCGCCTCGTGCCCCTCACCGAGGCGGCGGG
CGGCGGCAATGCGGATGTGGGCACCTCGCGGCCGGAGCCGGGCTACGGCATCTCCGTGGTACCGCTGCGCTATGTCTCCG
CCGAGGCGCTGATGCCGCTGCTGGACAGCTTCGCCACCAGGGCCGGCGCGGTGCGCGCCGATCCCGGACGCAATCTGCTC
ATCGTCCAGGGCACCGGGTCCGAGCGGCAATCGGCCATCAACACCGTGCTCTCCTTCGACGCCGACTGGATGCGCGGCCA
GTCGGTGGGGGTCTATCCGGTCCGCAACAGCGCGCCCGAGCCGCTGATCTCCGAGCTGGAGAGCATCATGGACGCGGGCG
ACAGCGGGCTGAGCCACAAGATGGTGAAGTTCCAGGCCATCAACCGCCTCAACGCCATCATGGTGGTGGCCAAGAAACCG
GAGCTGCTGCAGACCGCCGGAACCTGGATCGGCCGCCTCGACCGTTCCGACACCACGGTGGGCGTGCGCGTCTATCGCCT
GCGCTACGGCGACGCCAAGCAGATGGCAAAGGTGCTCAACGAGCTGTTCGTCGGCGGATCGTCCAGTGGCCTCGACCAGG
CGGCCAGCCAGATCGCGCCCGGCTCCGGCGCCTCGGTCTCGTCCGGCGGCGGTTCGGACGGAAATGGTTCCGGATCGGGC
CTCACGGTGCAGCAGCGGCTCGGCCAGTCCCCGCCCAAGCAGGACACGGGCGGCACGGGGGGCAAGACCATCGCCGTCGA
CAGCGAGGGCGCGCCCGTCGGCGGCTCCGGCGGCGGCGCGGGAGGGGGCGGCGCGCTGCTGTCCGGCATCCGCATCACCG
CCGACGCCATCAACAACTCGCTGCTGATCTTCGCCAGCCAGGAGAATTACCGCATCATCGAGCGCACCCTGATGCAGCTC
GACCAGCCGCAATTGCAGGTGGCCATCGAGGCCACCGTGGCCGAGGTGACGCTGAACGACACCCTGGCCTACGGCGTCCA
GTTCTATCTCACCAGCAAGGACCTCGGCCTCGGCCGCAACAACGGCTCGGTGCTGAACACCCTGTCCAGCGACATCACCG
ACCAGGCCATCAACCGCGTGCTGCCCGGCTTCAACCTGCTGGTGGGCCGCGAGAACCAGCCCCGCGCCATCCTCGACGCC
CTGCATACGGTGACCGACGTGAAGGTGCTGTCCAACCCGTCCGTGGTGGTGGTGGACAACCAGAAGGCGACGCTGCAGGT
GGGCGACGAGGTCCCGGTCTCCACCGGCAGCGCCACGGTGCTCTCGTCCTCCAACACGGTGGTCAACACCATCGAGTACA
AGAACACCGGCATCATCCTCCACGTGGTGCCGCGGGTGAACGTGAACGGGCAGGTGCGGCTCGAGATCGAGCAGGAGATC
AGCAACGTCACCCAGTCCGATCCCACCACCAGCGGCACCAGCAGCAATTCCACCGGGCTCACGCCCACCGTGTCCCAGCG
CAAGGTGAAGAGCGTCATCGCCGTGGCGAGCGGGCAGACCGTACTGCTCGCCGGTCTCATCAGCGAGCGCCACAACGGCG
TGCGGCAGGGCGTGCCGATCCTCGACCAGATCCCCGGCGTCGGCGACGCCTTCGCCCACACCAACGGCACGGTGAAGCGC
ACCGAGCTGATCATCTTCATCCGGCCCCAGATCATCCGCGACAATGTGGATGCCCATACGGTGGCTGAAGAGCTGCGCGC
CAAGCTGCGCGGCACCGTCACCACCCTGCCAGGCGGCCCGCAGGCGCCGCTCGGCGCACGGTGA

Upstream 100 bases:

>100_bases
CCCTAATATTTCTGTCATACGGCATCGATACTAGGTGACGTCCGTCCGGAGATCGGGGCCATCCACCTCGAACGGCAGCT
GGGTTCTATCGAGGCATCGG

Downstream 100 bases:

>100_bases
GGCCGGCCATGGCGATGTCTTTCCCCACGGCACTGTCCGCCGGTGACCGCGCCGGCAAGGCGGCCCTCGCGGCGGTGATC
GCAGCCGCCATGGCGACGAG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 767; Mature: 767

Protein sequence:

>767_residues
MEVRKDRPNRFGSRPGTLLLTCAILIATALAACSLVPDDVKPPSVMDQVRAIDLLPRDTKPVPGPQDIPDDRKAIEYFGS
STAAAVSDRSEVGVAGRGGVSGGADGYDLNFDNTPVTSVAKVVLGDILGVGYVIDPRVQGTVTLASARPVPKTELLYVLE
AALKTNNVAMVREGAGYRLVPLTEAAGGGNADVGTSRPEPGYGISVVPLRYVSAEALMPLLDSFATRAGAVRADPGRNLL
IVQGTGSERQSAINTVLSFDADWMRGQSVGVYPVRNSAPEPLISELESIMDAGDSGLSHKMVKFQAINRLNAIMVVAKKP
ELLQTAGTWIGRLDRSDTTVGVRVYRLRYGDAKQMAKVLNELFVGGSSSGLDQAASQIAPGSGASVSSGGGSDGNGSGSG
LTVQQRLGQSPPKQDTGGTGGKTIAVDSEGAPVGGSGGGAGGGGALLSGIRITADAINNSLLIFASQENYRIIERTLMQL
DQPQLQVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNTLSSDITDQAINRVLPGFNLLVGRENQPRAILDA
LHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSSNTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEI
SNVTQSDPTTSGTSSNSTGLTPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR
TELIIFIRPQIIRDNVDAHTVAEELRAKLRGTVTTLPGGPQAPLGAR

Sequences:

>Translated_767_residues
MEVRKDRPNRFGSRPGTLLLTCAILIATALAACSLVPDDVKPPSVMDQVRAIDLLPRDTKPVPGPQDIPDDRKAIEYFGS
STAAAVSDRSEVGVAGRGGVSGGADGYDLNFDNTPVTSVAKVVLGDILGVGYVIDPRVQGTVTLASARPVPKTELLYVLE
AALKTNNVAMVREGAGYRLVPLTEAAGGGNADVGTSRPEPGYGISVVPLRYVSAEALMPLLDSFATRAGAVRADPGRNLL
IVQGTGSERQSAINTVLSFDADWMRGQSVGVYPVRNSAPEPLISELESIMDAGDSGLSHKMVKFQAINRLNAIMVVAKKP
ELLQTAGTWIGRLDRSDTTVGVRVYRLRYGDAKQMAKVLNELFVGGSSSGLDQAASQIAPGSGASVSSGGGSDGNGSGSG
LTVQQRLGQSPPKQDTGGTGGKTIAVDSEGAPVGGSGGGAGGGGALLSGIRITADAINNSLLIFASQENYRIIERTLMQL
DQPQLQVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNTLSSDITDQAINRVLPGFNLLVGRENQPRAILDA
LHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSSNTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEI
SNVTQSDPTTSGTSSNSTGLTPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR
TELIIFIRPQIIRDNVDAHTVAEELRAKLRGTVTTLPGGPQAPLGAR
>Mature_767_residues
MEVRKDRPNRFGSRPGTLLLTCAILIATALAACSLVPDDVKPPSVMDQVRAIDLLPRDTKPVPGPQDIPDDRKAIEYFGS
STAAAVSDRSEVGVAGRGGVSGGADGYDLNFDNTPVTSVAKVVLGDILGVGYVIDPRVQGTVTLASARPVPKTELLYVLE
AALKTNNVAMVREGAGYRLVPLTEAAGGGNADVGTSRPEPGYGISVVPLRYVSAEALMPLLDSFATRAGAVRADPGRNLL
IVQGTGSERQSAINTVLSFDADWMRGQSVGVYPVRNSAPEPLISELESIMDAGDSGLSHKMVKFQAINRLNAIMVVAKKP
ELLQTAGTWIGRLDRSDTTVGVRVYRLRYGDAKQMAKVLNELFVGGSSSGLDQAASQIAPGSGASVSSGGGSDGNGSGSG
LTVQQRLGQSPPKQDTGGTGGKTIAVDSEGAPVGGSGGGAGGGGALLSGIRITADAINNSLLIFASQENYRIIERTLMQL
DQPQLQVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNTLSSDITDQAINRVLPGFNLLVGRENQPRAILDA
LHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSSNTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEI
SNVTQSDPTTSGTSSNSTGLTPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR
TELIIFIRPQIIRDNVDAHTVAEELRAKLRGTVTTLPGGPQAPLGAR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=318, Percent_Identity=31.7610062893082, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI1789793, Length=303, Percent_Identity=25.4125412541254, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 79997; Mature: 79997

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRKDRPNRFGSRPGTLLLTCAILIATALAACSLVPDDVKPPSVMDQVRAIDLLPRDTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
PVPGPQDIPDDRKAIEYFGSSTAAAVSDRSEVGVAGRGGVSGGADGYDLNFDNTPVTSVA
CCCCCCCCCCHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCEECCCCCCCHHHHH
KVVLGDILGVGYVIDPRVQGTVTLASARPVPKTELLYVLEAALKTNNVAMVREGAGYRLV
HHHHHHHHCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEE
PLTEAAGGGNADVGTSRPEPGYGISVVPLRYVSAEALMPLLDSFATRAGAVRADPGRNLL
EEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEECCCCCEEE
IVQGTGSERQSAINTVLSFDADWMRGQSVGVYPVRNSAPEPLISELESIMDAGDSGLSHK
EEECCCCHHHHHHHHHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHH
MVKFQAINRLNAIMVVAKKPELLQTAGTWIGRLDRSDTTVGVRVYRLRYGDAKQMAKVLN
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHH
ELFVGGSSSGLDQAASQIAPGSGASVSSGGGSDGNGSGSGLTVQQRLGQSPPKQDTGGTG
HHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCC
GKTIAVDSEGAPVGGSGGGAGGGGALLSGIRITADAINNSLLIFASQENYRIIERTLMQL
CCEEEECCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHC
DQPQLQVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNTLSSDITDQAINRV
CCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
LPGFNLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATV
CCCCEEEEECCCCCHHHHHHHHHHHHEEEECCCCEEEECCCCEEEEECCCCCCCCCCEEE
LSSSNTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGL
EECCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCC
TPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR
CCCHHHHHHHHHHEECCCCEEEEHHHHHHHCCCHHHCCCHHHHCCCCCCHHHCCCCCEEE
TELIIFIRPQIIRDNVDAHTVAEELRAKLRGTVTTLPGGPQAPLGAR
EEEEEEECCCHHHCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MEVRKDRPNRFGSRPGTLLLTCAILIATALAACSLVPDDVKPPSVMDQVRAIDLLPRDTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
PVPGPQDIPDDRKAIEYFGSSTAAAVSDRSEVGVAGRGGVSGGADGYDLNFDNTPVTSVA
CCCCCCCCCCHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCEECCCCCCCHHHHH
KVVLGDILGVGYVIDPRVQGTVTLASARPVPKTELLYVLEAALKTNNVAMVREGAGYRLV
HHHHHHHHCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEE
PLTEAAGGGNADVGTSRPEPGYGISVVPLRYVSAEALMPLLDSFATRAGAVRADPGRNLL
EEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEECCCCCEEE
IVQGTGSERQSAINTVLSFDADWMRGQSVGVYPVRNSAPEPLISELESIMDAGDSGLSHK
EEECCCCHHHHHHHHHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHH
MVKFQAINRLNAIMVVAKKPELLQTAGTWIGRLDRSDTTVGVRVYRLRYGDAKQMAKVLN
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHH
ELFVGGSSSGLDQAASQIAPGSGASVSSGGGSDGNGSGSGLTVQQRLGQSPPKQDTGGTG
HHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCC
GKTIAVDSEGAPVGGSGGGAGGGGALLSGIRITADAINNSLLIFASQENYRIIERTLMQL
CCEEEECCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHC
DQPQLQVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNTLSSDITDQAINRV
CCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
LPGFNLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATV
CCCCEEEEECCCCCHHHHHHHHHHHHEEEECCCCEEEECCCCEEEEECCCCCCCCCCEEE
LSSSNTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGL
EECCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCC
TPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR
CCCHHHHHHHHHHEECCCCEEEEHHHHHHHCCCHHHCCCHHHHCCCCCCHHHCCCCCEEE
TELIIFIRPQIIRDNVDAHTVAEELRAKLRGTVTTLPGGPQAPLGAR
EEEEEEECCCHHHCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]