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The map label for this gene is yckA [H]

Identifier: 154246018

GI number: 154246018

Start: 2335710

End: 2336369

Strand: Direct

Name: yckA [H]

Synonym: Xaut_2075

Alternate gene names: 154246018

Gene position: 2335710-2336369 (Clockwise)

Preceding gene: 154246017

Following gene: 154246019

Centisome position: 44.0

GC content: 65.61

Gene sequence:

>660_bases
ATGACGGCGTTTTCCACCTGGGACATCGTCTCCAACCTGCTGCTGGCCGCCCGCTGGACCGTGCTGCTCTCGCTGCTCGC
CTTCGTCGGCGGCGGCGTGGTGGGGCTGGTGGTGCTCTATGCCCGAATCGCCCGCAAGGCGTGGCTGCGCCGCGCCGCCG
GCCTCTACATCGAGCTGTTCCAGGGCACGCCTCTTCTGATGCAGCTGTTCCTGATCTTCTTCGGCCTGCCGCTGCTCGGC
CTCGACGTGTCGCCCTGGGCGGCGGCGTTCGTGTCGCTGACCCTGTGGAGCTCGGCCTTCCTCGCCGAGATCTGGCGCGG
CTGCGTCGAATCGATTCCCAAGGGGCAGTGGGAGGCCTCGTCCTCCCTCGCCATGAGCTTCGTGGAGCAGCTGCGCTACG
TGATCCTGCCCCAGTCCATGCGCATCGCGGTGCCGCCCACGGTGGGCTTCTCTGTGCAGGTGGTGAAGGGAACGGCGCTG
ACCTCCATCATCGGCTTCGTGGAGCTGTCCAAGGCCGCCACCATCATCACCAACGCCACGTTCGAGCCGTTCACGGTCTA
CGGCTTCGCGGCGCTGATCTATTTCGCCCTGTGCTGGCCCCTGTCGAAGTCGAGCCAGATCCTGGAGAGGAAGCTGAATG
TCGCTCATCACAATCACTGA

Upstream 100 bases:

>100_bases
ACATCGTCGCGACCGTGCTCTACCTCGCCCTCGCCGTGCTGGTGCGGCAGGTCATGCGGGGCATCGGCGCCCTGGTGTTC
CCCCGCAGGAGTGTCGCGCG

Downstream 100 bases:

>100_bases
GGTGCGCAAGAGCTTCGGCCAGAACGAGGTGCTGAAGGGCATCAACCTCGACATCGAGCCGGGCGAGGTCATCGCCATCA
TCGGCAAGTCGGGCTCGGGC

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTAFSTWDIVSNLLLAARWTVLLSLLAFVGGGVVGLVVLYARIARKAWLRRAAGLYIELFQGTPLLMQLFLIFFGLPLLG
LDVSPWAAAFVSLTLWSSAFLAEIWRGCVESIPKGQWEASSSLAMSFVEQLRYVILPQSMRIAVPPTVGFSVQVVKGTAL
TSIIGFVELSKAATIITNATFEPFTVYGFAALIYFALCWPLSKSSQILERKLNVAHHNH

Sequences:

>Translated_219_residues
MTAFSTWDIVSNLLLAARWTVLLSLLAFVGGGVVGLVVLYARIARKAWLRRAAGLYIELFQGTPLLMQLFLIFFGLPLLG
LDVSPWAAAFVSLTLWSSAFLAEIWRGCVESIPKGQWEASSSLAMSFVEQLRYVILPQSMRIAVPPTVGFSVQVVKGTAL
TSIIGFVELSKAATIITNATFEPFTVYGFAALIYFALCWPLSKSSQILERKLNVAHHNH
>Mature_218_residues
TAFSTWDIVSNLLLAARWTVLLSLLAFVGGGVVGLVVLYARIARKAWLRRAAGLYIELFQGTPLLMQLFLIFFGLPLLGL
DVSPWAAAFVSLTLWSSAFLAEIWRGCVESIPKGQWEASSSLAMSFVEQLRYVILPQSMRIAVPPTVGFSVQVVKGTALT
SIIGFVELSKAATIITNATFEPFTVYGFAALIYFALCWPLSKSSQILERKLNVAHHNH

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=36.9668246445498, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787030, Length=212, Percent_Identity=33.4905660377358, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=29.7029702970297, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787086, Length=174, Percent_Identity=32.7586206896552, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788646, Length=199, Percent_Identity=28.1407035175879, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786874, Length=167, Percent_Identity=29.3413173652695, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI48994930, Length=132, Percent_Identity=29.5454545454545, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787087, Length=118, Percent_Identity=33.0508474576271, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786873, Length=175, Percent_Identity=26.2857142857143, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24084; Mature: 23953

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFSTWDIVSNLLLAARWTVLLSLLAFVGGGVVGLVVLYARIARKAWLRRAAGLYIELF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
QGTPLLMQLFLIFFGLPLLGLDVSPWAAAFVSLTLWSSAFLAEIWRGCVESIPKGQWEAS
CCCHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
SSLAMSFVEQLRYVILPQSMRIAVPPTVGFSVQVVKGTALTSIIGFVELSKAATIITNAT
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCC
FEPFTVYGFAALIYFALCWPLSKSSQILERKLNVAHHNH
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TAFSTWDIVSNLLLAARWTVLLSLLAFVGGGVVGLVVLYARIARKAWLRRAAGLYIELF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
QGTPLLMQLFLIFFGLPLLGLDVSPWAAAFVSLTLWSSAFLAEIWRGCVESIPKGQWEAS
CCCHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
SSLAMSFVEQLRYVILPQSMRIAVPPTVGFSVQVVKGTALTSIIGFVELSKAATIITNAT
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCC
FEPFTVYGFAALIYFALCWPLSKSSQILERKLNVAHHNH
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]