Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 154246017

GI number: 154246017

Start: 2335039

End: 2335713

Strand: Direct

Name: yecS [H]

Synonym: Xaut_2074

Alternate gene names: 154246017

Gene position: 2335039-2335713 (Clockwise)

Preceding gene: 154246016

Following gene: 154246018

Centisome position: 43.98

GC content: 68.0

Gene sequence:

>675_bases
ATGGCCTACAGCTTCGATTTCTCCTCCCTCGGCGCCTATGCGCCGGTGATCGCCAAGGGCGTCGCCGTCACGCTGGAGCT
GATCGCCGTGGGCGGCGTGCTGGGGGTCACCCTCGGCATCGCCTGCGCCTGGGCCAAGACCCAGGGCCCGCGCTGGCTGC
GGCCGCTGGTGGAAGCCTATGTGGAGCTGATCCGCAACACGCCGTTCCTGATCCAGCTGTTCTTCATCTTCTTCGGCCTG
CCGGCCATCGGGGTCGGGCTCACCGAGATGCAGGCGGCCATCCTCGCCATGGTGATCAACCTCGGCGCCTACGCCTGCGA
GATCATCCGCGCCGGCATCGAGGCGACGCCCAAGGGCCAGTTCGAGGCCGGGGCCTCGCTGGCCATGAGCCGGGTGCAGA
CCTTCCGCCACGTGGTGCTGGTGCCGGCGCTGCAGAAGATCTGGCCGGCTTTGTCCTCGCAGATCGTCATCGTCATGTTC
GGCTCGGCGGTGTGCTCGCAGATCTCGGTGGAGGAGCTGACCTTCGCCGCCAACTTCATCCAGTCCCGCACGTTCCGGGC
GTTCGAGGCCTACATCGTCGCGACCGTGCTCTACCTCGCCCTCGCCGTGCTGGTGCGGCAGGTCATGCGGGGCATCGGCG
CCCTGGTGTTCCCCCGCAGGAGTGTCGCGCGATGA

Upstream 100 bases:

>100_bases
CTGCCCTGCGGCGAGAGGGAGCCGGGTTCCAGGCGCCGGCCCCGGTTCAGGAAGGCGGGTTCTGGCGTGTTGAGTGCCGC
CATTGGGGGAAAGGGCACAG

Downstream 100 bases:

>100_bases
CGGCGTTTTCCACCTGGGACATCGTCTCCAACCTGCTGCTGGCCGCCCGCTGGACCGTGCTGCTCTCGCTGCTCGCCTTC
GTCGGCGGCGGCGTGGTGGG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAYSFDFSSLGAYAPVIAKGVAVTLELIAVGGVLGVTLGIACAWAKTQGPRWLRPLVEAYVELIRNTPFLIQLFFIFFGL
PAIGVGLTEMQAAILAMVINLGAYACEIIRAGIEATPKGQFEAGASLAMSRVQTFRHVVLVPALQKIWPALSSQIVIVMF
GSAVCSQISVEELTFAANFIQSRTFRAFEAYIVATVLYLALAVLVRQVMRGIGALVFPRRSVAR

Sequences:

>Translated_224_residues
MAYSFDFSSLGAYAPVIAKGVAVTLELIAVGGVLGVTLGIACAWAKTQGPRWLRPLVEAYVELIRNTPFLIQLFFIFFGL
PAIGVGLTEMQAAILAMVINLGAYACEIIRAGIEATPKGQFEAGASLAMSRVQTFRHVVLVPALQKIWPALSSQIVIVMF
GSAVCSQISVEELTFAANFIQSRTFRAFEAYIVATVLYLALAVLVRQVMRGIGALVFPRRSVAR
>Mature_223_residues
AYSFDFSSLGAYAPVIAKGVAVTLELIAVGGVLGVTLGIACAWAKTQGPRWLRPLVEAYVELIRNTPFLIQLFFIFFGLP
AIGVGLTEMQAAILAMVINLGAYACEIIRAGIEATPKGQFEAGASLAMSRVQTFRHVVLVPALQKIWPALSSQIVIVMFG
SAVCSQISVEELTFAANFIQSRTFRAFEAYIVATVLYLALAVLVRQVMRGIGALVFPRRSVAR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=192, Percent_Identity=34.8958333333333, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787030, Length=209, Percent_Identity=31.5789473684211, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788646, Length=209, Percent_Identity=29.1866028708134, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788645, Length=201, Percent_Identity=26.3681592039801, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=26.7241379310345, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786874, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1786873, Length=209, Percent_Identity=24.4019138755981, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI48994930, Length=123, Percent_Identity=31.7073170731707, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24160; Mature: 24029

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSFDFSSLGAYAPVIAKGVAVTLELIAVGGVLGVTLGIACAWAKTQGPRWLRPLVEAY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VELIRNTPFLIQLFFIFFGLPAIGVGLTEMQAAILAMVINLGAYACEIIRAGIEATPKGQ
HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FEAGASLAMSRVQTFRHVVLVPALQKIWPALSSQIVIVMFGSAVCSQISVEELTFAANFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHH
QSRTFRAFEAYIVATVLYLALAVLVRQVMRGIGALVFPRRSVAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
AYSFDFSSLGAYAPVIAKGVAVTLELIAVGGVLGVTLGIACAWAKTQGPRWLRPLVEAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VELIRNTPFLIQLFFIFFGLPAIGVGLTEMQAAILAMVINLGAYACEIIRAGIEATPKGQ
HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FEAGASLAMSRVQTFRHVVLVPALQKIWPALSSQIVIVMFGSAVCSQISVEELTFAANFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHH
QSRTFRAFEAYIVATVLYLALAVLVRQVMRGIGALVFPRRSVAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]