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The map label for this gene is ybbN [H]

Identifier: 154245925

GI number: 154245925

Start: 2239823

End: 2240776

Strand: Direct

Name: ybbN [H]

Synonym: Xaut_1982

Alternate gene names: 154245925

Gene position: 2239823-2240776 (Clockwise)

Preceding gene: 154245914

Following gene: 154245926

Centisome position: 42.19

GC content: 69.92

Gene sequence:

>954_bases
ATGCTGTTGAACCAGGCGGGCGCCAAGGGCGCGGCGGGAACGGGCGCGGGAGCAGGCGCGAGCACGGGCGCCGGCAACGG
GGCGGCCGGCGGCGACATCATCGACACCACCACCCAGACCTTCATGGCCGAGGTGATGGAGGAATCCAAGCGCCGCCCGG
TGCTGGTGGACTTCTGGGCGCCGTGGTGCGGTCCGTGCAAGACCCTGACCCCGGTGATCGAGAAGGTGGTGAAGGCCGCC
AAGGGCAAGGTGCGTCTCGCCAAGCTCAACATCGACGATCACCCGGTCATCCCCGGCAAGCTCGGCATCCAGTCGGTGCC
CACGGTCTATGCCTTCGTGAACGGCCAGCCGGTGGACGGCTTCCAGGGCGCGCTGCCCGAAGGCCAGGTGAAGGCCTTCA
TCGATCGCCTCATCGGCCCCTCCGACGATGGCCTTGAGGAAGCGCTGGCCGCCGCCGACGCGGCGCTGGCCCAGGGCGAC
CTGACCGCCGCCGCCGAGATCTTCGTCGGCGTGCTGGGCGAGGAGCCGGACAATCTCAAGGCCCTCACCGGCCTGGTGCG
GACCCAGGTGGCCGCCGGCGCGCTGGAGCAGGCCAAGGCGACGCTTGCCATGGTGCCGGCCGACAAGCAGAACGACGCGC
TGGTGAATGCCGCCCGCGCCGCGCTGGACGTGGCCGAGCAGGCCGCCGCCCTCGGCGATCTCGCGACGTTGGAAGCCCGG
CTGGACCTCGACCCCGCAGATCACCAGGCCCGCTTCGACCTCGCCCTGGCGCTCAACGGCAAGGGCCGGCGCGAGCAGGC
GCTGATCCATCTCCTCGATATCGTGAAGCGCGACCGCGCGTGGAATGAGGATGCGGCCCGCAAGCAGCTGGTGCAGCTGT
TCGAGGCGTGGGGCCCCACCGATCCGCTCACCCTTTCAGGCCGTAAGAAATTGTCGGCGATCATGTTCGCCTGA

Upstream 100 bases:

>100_bases
TCGGGTCTAACGCCGATTGCAAGCGCGCGGCGAACGCCCATCTATGGGCTGTCCGCCCCGGCCGCGCCGGGCGGGCTGAC
GATTTCGGGGATTGCGACAC

Downstream 100 bases:

>100_bases
AGGGCGTTGTTTTTAAGGATTTTTCGTCTTGGCTGCCAATCGCACCTATCTGTCGCCGACGGAAATTCCGCCGGTGATCC
CGGTTTTTCCGCTCACCGGC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLLNQAGAKGAAGTGAGAGASTGAGNGAAGGDIIDTTTQTFMAEVMEESKRRPVLVDFWAPWCGPCKTLTPVIEKVVKAA
KGKVRLAKLNIDDHPVIPGKLGIQSVPTVYAFVNGQPVDGFQGALPEGQVKAFIDRLIGPSDDGLEEALAAADAALAQGD
LTAAAEIFVGVLGEEPDNLKALTGLVRTQVAAGALEQAKATLAMVPADKQNDALVNAARAALDVAEQAAALGDLATLEAR
LDLDPADHQARFDLALALNGKGRREQALIHLLDIVKRDRAWNEDAARKQLVQLFEAWGPTDPLTLSGRKKLSAIMFA

Sequences:

>Translated_317_residues
MLLNQAGAKGAAGTGAGAGASTGAGNGAAGGDIIDTTTQTFMAEVMEESKRRPVLVDFWAPWCGPCKTLTPVIEKVVKAA
KGKVRLAKLNIDDHPVIPGKLGIQSVPTVYAFVNGQPVDGFQGALPEGQVKAFIDRLIGPSDDGLEEALAAADAALAQGD
LTAAAEIFVGVLGEEPDNLKALTGLVRTQVAAGALEQAKATLAMVPADKQNDALVNAARAALDVAEQAAALGDLATLEAR
LDLDPADHQARFDLALALNGKGRREQALIHLLDIVKRDRAWNEDAARKQLVQLFEAWGPTDPLTLSGRKKLSAIMFA
>Mature_317_residues
MLLNQAGAKGAAGTGAGAGASTGAGNGAAGGDIIDTTTQTFMAEVMEESKRRPVLVDFWAPWCGPCKTLTPVIEKVVKAA
KGKVRLAKLNIDDHPVIPGKLGIQSVPTVYAFVNGQPVDGFQGALPEGQVKAFIDRLIGPSDDGLEEALAAADAALAQGD
LTAAAEIFVGVLGEEPDNLKALTGLVRTQVAAGALEQAKATLAMVPADKQNDALVNAARAALDVAEQAAALGDLATLEAR
LDLDPADHQARFDLALALNGKGRREQALIHLLDIVKRDRAWNEDAARKQLVQLFEAWGPTDPLTLSGRKKLSAIMFA

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=87, Percent_Identity=50.5747126436782, Blast_Score=89, Evalue=6e-18,
Organism=Escherichia coli, GI87081747, Length=285, Percent_Identity=30.5263157894737, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788936, Length=112, Percent_Identity=35.7142857142857, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082331, Length=103, Percent_Identity=41.747572815534, Blast_Score=91, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=113, Percent_Identity=40.7079646017699, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28573567, Length=72, Percent_Identity=44.4444444444444, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21358065, Length=87, Percent_Identity=36.7816091954023, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 33009; Mature: 33009

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNQAGAKGAAGTGAGAGASTGAGNGAAGGDIIDTTTQTFMAEVMEESKRRPVLVDFWA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
PWCGPCKTLTPVIEKVVKAAKGKVRLAKLNIDDHPVIPGKLGIQSVPTVYAFVNGQPVDG
CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
FQGALPEGQVKAFIDRLIGPSDDGLEEALAAADAALAQGDLTAAAEIFVGVLGEEPDNLK
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH
ALTGLVRTQVAAGALEQAKATLAMVPADKQNDALVNAARAALDVAEQAAALGDLATLEAR
HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LDLDPADHQARFDLALALNGKGRREQALIHLLDIVKRDRAWNEDAARKQLVQLFEAWGPT
ECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
DPLTLSGRKKLSAIMFA
CCEEECCHHHHHHHHCC
>Mature Secondary Structure
MLLNQAGAKGAAGTGAGAGASTGAGNGAAGGDIIDTTTQTFMAEVMEESKRRPVLVDFWA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
PWCGPCKTLTPVIEKVVKAAKGKVRLAKLNIDDHPVIPGKLGIQSVPTVYAFVNGQPVDG
CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
FQGALPEGQVKAFIDRLIGPSDDGLEEALAAADAALAQGDLTAAAEIFVGVLGEEPDNLK
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH
ALTGLVRTQVAAGALEQAKATLAMVPADKQNDALVNAARAALDVAEQAAALGDLATLEAR
HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LDLDPADHQARFDLALALNGKGRREQALIHLLDIVKRDRAWNEDAARKQLVQLFEAWGPT
ECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
DPLTLSGRKKLSAIMFA
CCEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]