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The map label for this gene is ybiS [H]

Identifier: 154245021

GI number: 154245021

Start: 1231002

End: 1231679

Strand: Reverse

Name: ybiS [H]

Synonym: Xaut_1072

Alternate gene names: 154245021

Gene position: 1231679-1231002 (Counterclockwise)

Preceding gene: 154245022

Following gene: 154245019

Centisome position: 23.2

GC content: 68.73

Gene sequence:

>678_bases
TTGGACTCTCCTCCCGCTTCCCCCCTGCTGTCGCGTCGTGGTCTCTTCACCACCCTCGTCCTGCCGCTGGCCCTCGGCGC
CTGCGTCACCACGCAGGACCAGCCGCCGGTAAAGGCGCCGCGCGTCGCGCCGGCCGATGCCGCGCGCTATGGCGCGCTGG
ACGATGGCGGCTTCCGCATTCCCGCCGCCGATCCGGACGACATCAAGCCGCGCAACGTGCGCCAGCTGGTGAAGGACACG
ACTGGGCAGGAGCCGGGCACGCTGGTGGTCGATCCCAGGAACCGCTTCCTCTACCTCGTGCAGGAGAACGGCAAGGCGCT
GCGCTACGGCGTGGGTGTCGGGCGCGAAGGGCTCGAATTCTCCGGCACGGCGAACGTGGGCAACAAGCGCGAATGGCCGA
GCTGGCGACCCACCGATGCCATGATCGCCCGCGAGCCCGCCAAGTATCGGCCCTGGGTCGGCGGCATGGCCGGGGGCGAG
ACCAATCCGCTCGGCGCCCGTGCGCTTTATCTGTTCAAGGACGGCAAGGACACGCTCTACCGCATCCACGGCACCAACGA
GCCGTGGACCATCGGCGAGGCGGTCTCCTCCGGCTGCATCCGCATGATGAACCAGGACGTGATCGACCTTTACCGCCGCG
TGCCGAACGGCACGAAGGTGGTGGTGCTTCCCGTCTGA

Upstream 100 bases:

>100_bases
CTGGTTGGCCCGCTGCTCGCCTCGACCCTCGACTATGCCAGCTTCAAGCGCGCGGTGGCCGAAGCCCGCCGTCGCCAGAC
CGCCGGGGAGTGAGCCGCTC

Downstream 100 bases:

>100_bases
GTTCTCCCAATTCAACACCTTTCCGCCCGTCCATCGTCCCGCGACGGGGGGATGCGCGAGCGCCCGGACCCTGCACGGCC
CGGGCGCTCGTTGCTTCAGG

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MDSPPASPLLSRRGLFTTLVLPLALGACVTTQDQPPVKAPRVAPADAARYGALDDGGFRIPAADPDDIKPRNVRQLVKDT
TGQEPGTLVVDPRNRFLYLVQENGKALRYGVGVGREGLEFSGTANVGNKREWPSWRPTDAMIAREPAKYRPWVGGMAGGE
TNPLGARALYLFKDGKDTLYRIHGTNEPWTIGEAVSSGCIRMMNQDVIDLYRRVPNGTKVVVLPV

Sequences:

>Translated_225_residues
MDSPPASPLLSRRGLFTTLVLPLALGACVTTQDQPPVKAPRVAPADAARYGALDDGGFRIPAADPDDIKPRNVRQLVKDT
TGQEPGTLVVDPRNRFLYLVQENGKALRYGVGVGREGLEFSGTANVGNKREWPSWRPTDAMIAREPAKYRPWVGGMAGGE
TNPLGARALYLFKDGKDTLYRIHGTNEPWTIGEAVSSGCIRMMNQDVIDLYRRVPNGTKVVVLPV
>Mature_225_residues
MDSPPASPLLSRRGLFTTLVLPLALGACVTTQDQPPVKAPRVAPADAARYGALDDGGFRIPAADPDDIKPRNVRQLVKDT
TGQEPGTLVVDPRNRFLYLVQENGKALRYGVGVGREGLEFSGTANVGNKREWPSWRPTDAMIAREPAKYRPWVGGMAGGE
TNPLGARALYLFKDGKDTLYRIHGTNEPWTIGEAVSSGCIRMMNQDVIDLYRRVPNGTKVVVLPV

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=149, Percent_Identity=33.5570469798658, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787356, Length=132, Percent_Identity=34.0909090909091, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788299, Length=140, Percent_Identity=31.4285714285714, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787968, Length=116, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24495; Mature: 24495

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSPPASPLLSRRGLFTTLVLPLALGACVTTQDQPPVKAPRVAPADAARYGALDDGGFRI
CCCCCCCHHHHHCCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCEEC
PAADPDDIKPRNVRQLVKDTTGQEPGTLVVDPRNRFLYLVQENGKALRYGVGVGREGLEF
CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCC
SGTANVGNKREWPSWRPTDAMIAREPAKYRPWVGGMAGGETNPLGARALYLFKDGKDTLY
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEE
RIHGTNEPWTIGEAVSSGCIRMMNQDVIDLYRRVPNGTKVVVLPV
EEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure
MDSPPASPLLSRRGLFTTLVLPLALGACVTTQDQPPVKAPRVAPADAARYGALDDGGFRI
CCCCCCCHHHHHCCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCEEC
PAADPDDIKPRNVRQLVKDTTGQEPGTLVVDPRNRFLYLVQENGKALRYGVGVGREGLEF
CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCC
SGTANVGNKREWPSWRPTDAMIAREPAKYRPWVGGMAGGETNPLGARALYLFKDGKDTLY
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEE
RIHGTNEPWTIGEAVSSGCIRMMNQDVIDLYRRVPNGTKVVVLPV
EEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]