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The map label for this gene is arpC [H]

Identifier: 154245007

GI number: 154245007

Start: 1212698

End: 1214233

Strand: Reverse

Name: arpC [H]

Synonym: Xaut_1058

Alternate gene names: 154245007

Gene position: 1214233-1212698 (Counterclockwise)

Preceding gene: 154245010

Following gene: 154245006

Centisome position: 22.87

GC content: 68.23

Gene sequence:

>1536_bases
ATGCGAGACCTGTTTGCCCTTTCCGGGCTCGCGCCCTGCCTAAAGGGAGGCGCCTTCGCCGCTTCCCTGCTGCTCATGAA
CGGCTGCATGGTGGGGCCGGACTTCGAGGCGCCCGATGCACCGCGCGTCAGCGGCTACCTGCCCGAAGGCACGCCCCGTC
CTACGACCTCGGCGGATGTCCATGGTGGAAGCCGCCAGGTCTTTCTCCGCGGTCGCGATCTGCCCGGCGAGTGGTGGCGG
GTGTTCCGCAACAAGCAGATCGATGCCTTCGTCGCGGAGGCGATCCGCAACCATCCGGACGTGACCGCCGCCCAGGCTGC
GCTGCGGGCGGCACGCGAAAACGCCCTGGCCGGCGAGGGCGCCCTGTTTCCGCAGGTGTCGGCGAGCGGCAGCGCCACCC
GGCAGGTCGCCTCGCTGGCGAGCCAGGGCGAGAGCGGCAACACCAGCCCCTACAATCTCTACAACGCCTCGGTCAGCGTC
AGCTATGTGCTGGACGTATGGGGTGGCACCCGCCGGCAGGTCGAGGCGCTGGAGGCGCAGGCGGACTATCAACGCTTCCA
GCTGGAGGCGACCTATCTCAGCCTCACCGCGAATGTGGTGACGGCGGCCATCACCGATGCCTCTCTGCGCGCGCAGATCG
AAGCAACCAACGACATCATCAAGTCCGAGCAGGAACAGCTCAAGCTGGTCCAGCGCCAGTTCGAGCTGGGCGCGGTGGCT
CAATCCGACGTGCTATCGCAGCAGTCCAATCTCGCCCAGACCCAGGCGACCCTGCCGCCGCTGCAGAAGCAGCTCGCCCA
GCAGCGTAACCAGCTGATGGCCTATCTCGGCCGGCTGCCGAGCCAGGATCGGGGCGAGCACGTGACCCTTGCCAGTCTCA
CATTGCCGCGCGATCTTCCCGTCAGCGTCCCCTCCGCGCTGGTGCGGCAGCGGCCCGATATCGGCGCGGTGGAGGCGAGC
CTGCACAAGGCCACCGCCACCGTGGGCGTCAACGTGGCCAATATGCTGCCGCAGGTTCAGCTCACCGGTAGCTACGGCAG
GGCCGGCCTCACCCCCGACAGCCTGTTCTCGCCGGGCACCGCCGCCTGGAGCATCGCCGGCAGCGTCGCACAGACGGTGT
TCGACGGCGGGACGCTCTACCACGACAAGGAATCCGCCGTCGCGAGCAACGAGCAGGCGCTGGCGCAATACAAGAGCACG
GTCATCACCGCCTTCCGCGACGTGGCGGATTCGCTGCGCGCCATCGAGGCTGATGCCAGCACGCTGAAGGCCCAGCTCGC
CTATGAGAAGGCGGCGCAGGAGAGCGTGAAGATCTCCCGCACCCAGTATCTGGCCGGCGCGGTGACCTATCCCTCGGTGC
TCACAGCCGAGCAGAACTTCCAGCAGGCCGTGGTCGCGCGGGTGAAGGCGCAGGCCGCCCGCTTCACCGATACCGCGGCG
CTGTTCCAGGCCCTGGGCGGCGGCTGGTGGAACCGTGTGGACCAGACGGCGCAGGCCGAACCCCGCACCAACGCCGGCTA
TTTCCAGGACCACTGA

Upstream 100 bases:

>100_bases
TGTACGGTTCAGTCCATATTGACTCTCCACTTGCCTCGCCCTACTCGTATATCGAACTGAACGGTTCGGTTCAGGCTGTT
GTACCGGGGTGCCATCACAC

Downstream 100 bases:

>100_bases
GCGGTACGCACGACCCCTCGCCCCTGCGCCCTCAAAACGCCACCTGCGCCGCAGCCGCAAGAAGAGACGTCAGATGAAGA
AACGGATGATCCTCATGCTG

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MRDLFALSGLAPCLKGGAFAASLLLMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADVHGGSRQVFLRGRDLPGEWWR
VFRNKQIDAFVAEAIRNHPDVTAAQAALRAARENALAGEGALFPQVSASGSATRQVASLASQGESGNTSPYNLYNASVSV
SYVLDVWGGTRRQVEALEAQADYQRFQLEATYLSLTANVVTAAITDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVA
QSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLPVSVPSALVRQRPDIGAVEAS
LHKATATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGTAAWSIAGSVAQTVFDGGTLYHDKESAVASNEQALAQYKST
VITAFRDVADSLRAIEADASTLKAQLAYEKAAQESVKISRTQYLAGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAA
LFQALGGGWWNRVDQTAQAEPRTNAGYFQDH

Sequences:

>Translated_511_residues
MRDLFALSGLAPCLKGGAFAASLLLMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADVHGGSRQVFLRGRDLPGEWWR
VFRNKQIDAFVAEAIRNHPDVTAAQAALRAARENALAGEGALFPQVSASGSATRQVASLASQGESGNTSPYNLYNASVSV
SYVLDVWGGTRRQVEALEAQADYQRFQLEATYLSLTANVVTAAITDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVA
QSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLPVSVPSALVRQRPDIGAVEAS
LHKATATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGTAAWSIAGSVAQTVFDGGTLYHDKESAVASNEQALAQYKST
VITAFRDVADSLRAIEADASTLKAQLAYEKAAQESVKISRTQYLAGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAA
LFQALGGGWWNRVDQTAQAEPRTNAGYFQDH
>Mature_511_residues
MRDLFALSGLAPCLKGGAFAASLLLMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADVHGGSRQVFLRGRDLPGEWWR
VFRNKQIDAFVAEAIRNHPDVTAAQAALRAARENALAGEGALFPQVSASGSATRQVASLASQGESGNTSPYNLYNASVSV
SYVLDVWGGTRRQVEALEAQADYQRFQLEATYLSLTANVVTAAITDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVA
QSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLPVSVPSALVRQRPDIGAVEAS
LHKATATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGTAAWSIAGSVAQTVFDGGTLYHDKESAVASNEQALAQYKST
VITAFRDVADSLRAIEADASTLKAQLAYEKAAQESVKISRTQYLAGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAA
LFQALGGGWWNRVDQTAQAEPRTNAGYFQDH

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=486, Percent_Identity=25.1028806584362, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI2367348, Length=440, Percent_Identity=22.2727272727273, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 54652; Mature: 54652

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLFALSGLAPCLKGGAFAASLLLMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADV
CCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGGSRQVFLRGRDLPGEWWRVFRNKQIDAFVAEAIRNHPDVTAAQAALRAARENALAGEG
CCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
ALFPQVSASGSATRQVASLASQGESGNTSPYNLYNASVSVSYVLDVWGGTRRQVEALEAQ
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCHHHHHHHHHH
ADYQRFQLEATYLSLTANVVTAAITDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVA
HHHHHHEEEHHHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
VSVPSALVRQRPDIGAVEASLHKATATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGT
CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCCCCCHHHCCCCCC
AAWSIAGSVAQTVFDGGTLYHDKESAVASNEQALAQYKSTVITAFRDVADSLRAIEADAS
HHHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLKAQLAYEKAAQESVKISRTQYLAGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFQALGGGWWNRVDQTAQAEPRTNAGYFQDH
HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDLFALSGLAPCLKGGAFAASLLLMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADV
CCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGGSRQVFLRGRDLPGEWWRVFRNKQIDAFVAEAIRNHPDVTAAQAALRAARENALAGEG
CCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
ALFPQVSASGSATRQVASLASQGESGNTSPYNLYNASVSVSYVLDVWGGTRRQVEALEAQ
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCHHHHHHHHHH
ADYQRFQLEATYLSLTANVVTAAITDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVA
HHHHHHEEEHHHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
VSVPSALVRQRPDIGAVEASLHKATATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGT
CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCCCCCHHHCCCCCC
AAWSIAGSVAQTVFDGGTLYHDKESAVASNEQALAQYKSTVITAFRDVADSLRAIEADAS
HHHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLKAQLAYEKAAQESVKISRTQYLAGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFQALGGGWWNRVDQTAQAEPRTNAGYFQDH
HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]