Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 154244844

GI number: 154244844

Start: 997290

End: 998072

Strand: Direct

Name: ycdC [C]

Synonym: Xaut_0894

Alternate gene names: 154244844

Gene position: 997290-998072 (Clockwise)

Preceding gene: 154244837

Following gene: 154244845

Centisome position: 18.79

GC content: 69.86

Gene sequence:

>783_bases
ATGGCCGGCGCCGGGGCTCGCCCAGCGGGGCGCCGGAGGGCAGGAACAGGACAGATGGCTCGGACCCGCGCGCAGGACTA
CGACGCAAAACGGCAGGTGATCCTGCACAAGTCGGCGGAGCTGTTCGCCCAGTTCGGCTATTCCGGCACCTCGATCACCA
TGATCGCGGAGGCGTGCGGCGCCTCCAAGGCGCTGCTCTATCACTATTATCCGGACAAGGAGGCGGTGCTCTTCGACATC
CTCTCCACCCATCTGGAGCAGCTCATCCAGGCGGTGGAGGCGGCCCTGGAAGCAGCTCCCGAGGGCGATCGCCTGTTCGC
CATCGCCGCCGCCCTGCTTGAAGCCTATCGCGATGCCGATGCCGAGCATCAGATCCAGATTGCCAACCTCAAGCTGCTGC
CGGCCGACAAGCAGGACGCGCTGCGGGCCATGGAGCGCCAGCTGGTGGTGCTCATGTCGGACGCCATCGCGCAGGAGGTG
CCGGAGATCGGCCGGGGGCCGCTCCTGAAGCCGGTCACCATGTCCGCCTTCGGCATGCTGAACTGGCACTATCTGTGGTT
TCGCGAGGGCAAGGGCCTGACCCGCGCCGAATATGCCCGCCTCGTCACCAGCCTGATCACCGCCGGCGCCGCAGGAGCGG
CGGCGGCAGTTGCAGGTCCGGAGGCGCCGCTCCGTGCCGAGCCGCGCGTGCGCGCGATCGCGCCAGCCGCGGCGCCGGTT
GCGGCCGCGCGCCGCCGGGCTCCGCCGTCCACCGCCAAGGCCGGACGGCGCAAGGCGGATTAG

Upstream 100 bases:

>100_bases
CAATATAATCGGCATCTCCCGGAAGCGCTTGATGTGGATCATTGATCGACCAGACGGACAATATTTGTTATCTCCTGTTC
GTGCGCCCCCGGGGCGGATG

Downstream 100 bases:

>100_bases
ACCGCGAGCCGGGCAAATGGCTTCAATTTGCTCGGTGAATCGCCTTCCTATGGTCTCGGCCGGGGTTTCCGCTTCCGCTT
ATCTCGCGCTATGGAACGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Of Paa Operon; Paa Operon Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAGAGARPAGRRRAGTGQMARTRAQDYDAKRQVILHKSAELFAQFGYSGTSITMIAEACGASKALLYHYYPDKEAVLFDI
LSTHLEQLIQAVEAALEAAPEGDRLFAIAAALLEAYRDADAEHQIQIANLKLLPADKQDALRAMERQLVVLMSDAIAQEV
PEIGRGPLLKPVTMSAFGMLNWHYLWFREGKGLTRAEYARLVTSLITAGAAGAAAAVAGPEAPLRAEPRVRAIAPAAAPV
AAARRRAPPSTAKAGRRKAD

Sequences:

>Translated_260_residues
MAGAGARPAGRRRAGTGQMARTRAQDYDAKRQVILHKSAELFAQFGYSGTSITMIAEACGASKALLYHYYPDKEAVLFDI
LSTHLEQLIQAVEAALEAAPEGDRLFAIAAALLEAYRDADAEHQIQIANLKLLPADKQDALRAMERQLVVLMSDAIAQEV
PEIGRGPLLKPVTMSAFGMLNWHYLWFREGKGLTRAEYARLVTSLITAGAAGAAAAVAGPEAPLRAEPRVRAIAPAAAPV
AAARRRAPPSTAKAGRRKAD
>Mature_259_residues
AGAGARPAGRRRAGTGQMARTRAQDYDAKRQVILHKSAELFAQFGYSGTSITMIAEACGASKALLYHYYPDKEAVLFDIL
STHLEQLIQAVEAALEAAPEGDRLFAIAAALLEAYRDADAEHQIQIANLKLLPADKQDALRAMERQLVVLMSDAIAQEVP
EIGRGPLLKPVTMSAFGMLNWHYLWFREGKGLTRAEYARLVTSLITAGAAGAAAAVAGPEAPLRAEPRVRAIAPAAAPVA
AARRRAPPSTAKAGRRKAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27824; Mature: 27693

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGAGARPAGRRRAGTGQMARTRAQDYDAKRQVILHKSAELFAQFGYSGTSITMIAEACG
CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
ASKALLYHYYPDKEAVLFDILSTHLEQLIQAVEAALEAAPEGDRLFAIAAALLEAYRDAD
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
AEHQIQIANLKLLPADKQDALRAMERQLVVLMSDAIAQEVPEIGRGPLLKPVTMSAFGML
CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
NWHYLWFREGKGLTRAEYARLVTSLITAGAAGAAAAVAGPEAPLRAEPRVRAIAPAAAPV
HEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHEECCCHHHH
AAARRRAPPSTAKAGRRKAD
HHHHHCCCCCHHHCCCCCCC
>Mature Secondary Structure 
AGAGARPAGRRRAGTGQMARTRAQDYDAKRQVILHKSAELFAQFGYSGTSITMIAEACG
CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
ASKALLYHYYPDKEAVLFDILSTHLEQLIQAVEAALEAAPEGDRLFAIAAALLEAYRDAD
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
AEHQIQIANLKLLPADKQDALRAMERQLVVLMSDAIAQEVPEIGRGPLLKPVTMSAFGML
CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
NWHYLWFREGKGLTRAEYARLVTSLITAGAAGAAAAVAGPEAPLRAEPRVRAIAPAAAPV
HEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHEECCCHHHH
AAARRRAPPSTAKAGRRKAD
HHHHHCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA