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The map label for this gene is ynbD [H]

Identifier: 153950363

GI number: 153950363

Start: 3383033

End: 3384352

Strand: Reverse

Name: ynbD [H]

Synonym: YpsIP31758_3002

Alternate gene names: 153950363

Gene position: 3384352-3383033 (Counterclockwise)

Preceding gene: 153947830

Following gene: 153948621

Centisome position: 71.65

GC content: 53.18

Gene sequence:

>1320_bases
ATGGTTGAGTCCGCACTCACGCAGAACAAATACAGCCTCTGGAAACAGGGGGTGTGCTGGTTGTTGCTGTTGGGGCCGCT
GTTTTTCCTCAGCTACGGGCAGGTGAATCAATTTACAGCCACAAGGTACGATGTAGGGAGCAGGGTGTTTGCCTGGGAAC
ACGCGATCCCCTTTATGCCGTGGACCATCGTGCCTTACTGGAGCATTGACCTGCTGTATGGCATTTCGCTTTTTATTTGC
ACTTCAAAACAGGAGCTGACACGCCACGGCTGTCGGCTGCTTGCCTCCTCACTTATCGCCTGTGCGGGATTTTTACTCTT
CCCGCTGAAATTCACTTTTGTACGTCCGGAAACACAGGACATGTTTGGCTGGTTGTTTCACCAGCTCGAACTGTTTGATT
TGCCTTATAACCAGGCTCCGTCATTGCATATCATTCTGACGTGGCTGCTGTGGCTGCGCTTTCGTCAGCATCTGAACCGT
GGGGCAAGGATGGTCTCTGGTGCATGGTTTTTGCTGATAGCCGCTTCGGTGTTGACGACCTGGCAGCACCATTTTGTCGA
CGTTCTTAGTGGATTTATTGTGGCCGTCGTTATCAGCTACGCCATTCCGATTGAAGGCCAGTGGCGCTGGAAACGCCCGT
CACCTCACGCGCTGCGCCTTGCGGCAAAATATACACTCGGTGGCATCATCTTTTTACTGGCCGGGGTGCTGATCCCAGGC
AGCTATTTTTTACTGTGGCCTGCGGGCGCTCTACTGATGGTCTCTGCGGGTTATGTGGGCCTTGGCACGAGCCTATTCCA
GAAAAACGAACACGGGCATTTATCTCTTTCGGCCCGTTTATTGCTCTGGCCTTATTTAACGGGTGCAAGGCTTTCAAAGA
TGTGGTTTTCTCGCCACATTCCCAAAACTTCCGCCATTTTAGATGGGGTATCGCTGGGCTGTTTTCCTGATAAATCGCTG
CAACAGACCGCGGTGCTCGACCTGACGGCCGAGTTTCATCACAGAACCCGCGTGCCTGGTGTCTGGTATGCTTATCCGTT
GATGGATTTAGTGGTGCCAGATGTACAGGATATTGCGCAGGCGGTAGCAAAACTCACTGAGCTACGGCAGGGACATCTAA
CGGTTGTGGTGTGCTGCGCACTGGGTTTATCCCGCAGCGCAACGGTTGTCGCCGCCTGGCTTCTGGCTCAGGGCCACGTT
TCTTGTGTCCAGGAGGCTATTGACCTTATCAAAAGCCAACGTCCGCAGGTGGTGCTGACACCTGCCCATATCCACGCACT
GGAACAGTTTCAGGGAACGCTATGCCAGATATCGCTCTGA

Upstream 100 bases:

>100_bases
GAGATGGACACGCTGGTGGAGCAGGCCGGCTTTGAAAAATGCCATCAGGTGATTGATGAGTTTGGCATTTTCACCGTGTC
GCTGGCGGTGAGAAAGCAGC

Downstream 100 bases:

>100_bases
CCAATCGCATTGTGAAAATTCATCTATCGAGCTGGCGTTATTTCGCCTTATTAACGCTACCACCGCTGGTGCTGGCTTTT
AATCTTTTGTACTCGTTCGC

Product: PAP2 family phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MVESALTQNKYSLWKQGVCWLLLLGPLFFLSYGQVNQFTATRYDVGSRVFAWEHAIPFMPWTIVPYWSIDLLYGISLFIC
TSKQELTRHGCRLLASSLIACAGFLLFPLKFTFVRPETQDMFGWLFHQLELFDLPYNQAPSLHIILTWLLWLRFRQHLNR
GARMVSGAWFLLIAASVLTTWQHHFVDVLSGFIVAVVISYAIPIEGQWRWKRPSPHALRLAAKYTLGGIIFLLAGVLIPG
SYFLLWPAGALLMVSAGYVGLGTSLFQKNEHGHLSLSARLLLWPYLTGARLSKMWFSRHIPKTSAILDGVSLGCFPDKSL
QQTAVLDLTAEFHHRTRVPGVWYAYPLMDLVVPDVQDIAQAVAKLTELRQGHLTVVVCCALGLSRSATVVAAWLLAQGHV
SCVQEAIDLIKSQRPQVVLTPAHIHALEQFQGTLCQISL

Sequences:

>Translated_439_residues
MVESALTQNKYSLWKQGVCWLLLLGPLFFLSYGQVNQFTATRYDVGSRVFAWEHAIPFMPWTIVPYWSIDLLYGISLFIC
TSKQELTRHGCRLLASSLIACAGFLLFPLKFTFVRPETQDMFGWLFHQLELFDLPYNQAPSLHIILTWLLWLRFRQHLNR
GARMVSGAWFLLIAASVLTTWQHHFVDVLSGFIVAVVISYAIPIEGQWRWKRPSPHALRLAAKYTLGGIIFLLAGVLIPG
SYFLLWPAGALLMVSAGYVGLGTSLFQKNEHGHLSLSARLLLWPYLTGARLSKMWFSRHIPKTSAILDGVSLGCFPDKSL
QQTAVLDLTAEFHHRTRVPGVWYAYPLMDLVVPDVQDIAQAVAKLTELRQGHLTVVVCCALGLSRSATVVAAWLLAQGHV
SCVQEAIDLIKSQRPQVVLTPAHIHALEQFQGTLCQISL
>Mature_439_residues
MVESALTQNKYSLWKQGVCWLLLLGPLFFLSYGQVNQFTATRYDVGSRVFAWEHAIPFMPWTIVPYWSIDLLYGISLFIC
TSKQELTRHGCRLLASSLIACAGFLLFPLKFTFVRPETQDMFGWLFHQLELFDLPYNQAPSLHIILTWLLWLRFRQHLNR
GARMVSGAWFLLIAASVLTTWQHHFVDVLSGFIVAVVISYAIPIEGQWRWKRPSPHALRLAAKYTLGGIIFLLAGVLIPG
SYFLLWPAGALLMVSAGYVGLGTSLFQKNEHGHLSLSARLLLWPYLTGARLSKMWFSRHIPKTSAILDGVSLGCFPDKSL
QQTAVLDLTAEFHHRTRVPGVWYAYPLMDLVVPDVQDIAQAVAKLTELRQGHLTVVVCCALGLSRSATVVAAWLLAQGHV
SCVQEAIDLIKSQRPQVVLTPAHIHALEQFQGTLCQISL

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=427, Percent_Identity=48.711943793911, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 49352; Mature: 49352

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50056 TYR_PHOSPHATASE_2 ; PS00391 ATPASE_NA_K_BETA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVESALTQNKYSLWKQGVCWLLLLGPLFFLSYGQVNQFTATRYDVGSRVFAWEHAIPFMP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCEEEEECCCCCCCC
WTIVPYWSIDLLYGISLFICTSKQELTRHGCRLLASSLIACAGFLLFPLKFTFVRPETQD
CEECCHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHH
MFGWLFHQLELFDLPYNQAPSLHIILTWLLWLRFRQHLNRGARMVSGAWFLLIAASVLTT
HHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQHHFVDVLSGFIVAVVISYAIPIEGQWRWKRPSPHALRLAAKYTLGGIIFLLAGVLIPG
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
SYFLLWPAGALLMVSAGYVGLGTSLFQKNEHGHLSLSARLLLWPYLTGARLSKMWFSRHI
CEEEEECCCHHHHHCCCCHHCCHHHHHCCCCCCEEEEEHEEEHHHHHHHHHHHHHHHHCC
PKTSAILDGVSLGCFPDKSLQQTAVLDLTAEFHHRTRVPGVWYAYPLMDLVVPDVQDIAQ
CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
AVAKLTELRQGHLTVVVCCALGLSRSATVVAAWLLAQGHVSCVQEAIDLIKSQRPQVVLT
HHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEE
PAHIHALEQFQGTLCQISL
HHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MVESALTQNKYSLWKQGVCWLLLLGPLFFLSYGQVNQFTATRYDVGSRVFAWEHAIPFMP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCEEEEECCCCCCCC
WTIVPYWSIDLLYGISLFICTSKQELTRHGCRLLASSLIACAGFLLFPLKFTFVRPETQD
CEECCHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHH
MFGWLFHQLELFDLPYNQAPSLHIILTWLLWLRFRQHLNRGARMVSGAWFLLIAASVLTT
HHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQHHFVDVLSGFIVAVVISYAIPIEGQWRWKRPSPHALRLAAKYTLGGIIFLLAGVLIPG
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
SYFLLWPAGALLMVSAGYVGLGTSLFQKNEHGHLSLSARLLLWPYLTGARLSKMWFSRHI
CEEEEECCCHHHHHCCCCHHCCHHHHHCCCCCCEEEEEHEEEHHHHHHHHHHHHHHHHCC
PKTSAILDGVSLGCFPDKSLQQTAVLDLTAEFHHRTRVPGVWYAYPLMDLVVPDVQDIAQ
CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
AVAKLTELRQGHLTVVVCCALGLSRSATVVAAWLLAQGHVSCVQEAIDLIKSQRPQVVLT
HHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEE
PAHIHALEQFQGTLCQISL
HHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]