Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 153949315

GI number: 153949315

Start: 4129657

End: 4130538

Strand: Direct

Name: psd [H]

Synonym: YpsIP31758_3663

Alternate gene names: 153949315

Gene position: 4129657-4130538 (Clockwise)

Preceding gene: 153947749

Following gene: 153949019

Centisome position: 87.43

GC content: 50.57

Gene sequence:

>882_bases
GTGCTAGACAGTATCAAAATTAAACTACAATATTTACTTCCGAAACAAGGGCTAACACAACTCGCTGGCTGGGGAGCGAA
TAAGCAAGGCGGCTGGTTGACCCAGTTAGTCATCAAAGCTTTTGCCCGTTATTACAAGGTCGATATGAAAGAAGCGCAGG
ATCCTGAATTCTCCGCTTATCGTACCTTCAACGAATTCTTTGTTCGCCCGTTACGCGCAGGTGTACGCCCGGTTGTGGCT
GAAGAAAACCTGTTAGCCCAACCTGCCGATGGCGCAATAAGCCAGTTAGGGGCCATCCGAGAGGGGCAAATTTTACAGGC
GAAAGGCCATAATTACAGTCTGGAAGCCCTATTAGCCGGTAACTATCTGCTGGCTGCTGAATTCCAAAATGGGCAGTTTG
TTACCACTTACCTGGCCCCCCGAGACTACCACCGGGTGCATATGCCATGTGATGGTGTGCTACGCGAAATGATTTATGTG
CCGGGGGATTTGTTCTCGGTCAATCCGTTAACCGCTGCCAATGTTCCTAATTTGTTCGCCCGTAACGAACGCGTTATTTG
TATCTTTGATACCGCCTTTGGCCCAATGGCCCAAATTCTGGTGGGTGCGACCATTGTTGGCAGTATAGAGACCGTCTGGG
CGGGGACAATTACCCCCCCACGGGAAGGCGTTATCCGCCGTTGGACATACCCGCAAGCAGGCTGTGAAGGGGCTATCACC
CTAGAGAAAGGCCAAGAAATGGGGCGTTTTAAATTAGGCTCAACCGTTATTAACCTGTTTGCGGAAGGTAAAGTGTATTT
CGCACCACAGCTAAACAGCGGCGCGGTTACCCGTATGGGTGAAGTCTTAGCCGAAGCGGTTCCTACTACCCCTTCTTACT
AG

Upstream 100 bases:

>100_bases
ACGCTGCTGTGGCGTCAAGTAAGAAGGGTCTGACAGGGTGGGCGCAGAGCGATACAATGCGCCCCCTTATTTTATCTAAC
GGTTTACCCAAGAGGTTGAC

Downstream 100 bases:

>100_bases
CATGATGCTGACGACGTAACACGATGTTAAGGAGCTCTTACGTGCGCCCGATAATTTCATGGTCTTTTGGTCTATTACTG
TCGTTTTTCCTGTTAATGCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLDSIKIKLQYLLPKQGLTQLAGWGANKQGGWLTQLVIKAFARYYKVDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPVVA
EENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYV
PGDLFSVNPLTAANVPNLFARNERVICIFDTAFGPMAQILVGATIVGSIETVWAGTITPPREGVIRRWTYPQAGCEGAIT
LEKGQEMGRFKLGSTVINLFAEGKVYFAPQLNSGAVTRMGEVLAEAVPTTPSY

Sequences:

>Translated_293_residues
MLDSIKIKLQYLLPKQGLTQLAGWGANKQGGWLTQLVIKAFARYYKVDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPVVA
EENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYV
PGDLFSVNPLTAANVPNLFARNERVICIFDTAFGPMAQILVGATIVGSIETVWAGTITPPREGVIRRWTYPQAGCEGAIT
LEKGQEMGRFKLGSTVINLFAEGKVYFAPQLNSGAVTRMGEVLAEAVPTTPSY
>Mature_293_residues
MLDSIKIKLQYLLPKQGLTQLAGWGANKQGGWLTQLVIKAFARYYKVDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPVVA
EENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYV
PGDLFSVNPLTAANVPNLFARNERVICIFDTAFGPMAQILVGATIVGSIETVWAGTITPPREGVIRRWTYPQAGCEGAIT
LEKGQEMGRFKLGSTVINLFAEGKVYFAPQLNSGAVTRMGEVLAEAVPTTPSY

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=306, Percent_Identity=31.0457516339869, Blast_Score=132, Evalue=3e-31,
Organism=Escherichia coli, GI1790604, Length=289, Percent_Identity=73.7024221453287, Blast_Score=451, Evalue=1e-128,
Organism=Caenorhabditis elegans, GI71980843, Length=282, Percent_Identity=32.9787234042553, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI71980840, Length=282, Percent_Identity=32.9787234042553, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6321609, Length=246, Percent_Identity=31.3008130081301, Blast_Score=119, Evalue=7e-28,
Organism=Saccharomyces cerevisiae, GI6324160, Length=159, Percent_Identity=38.9937106918239, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24649526, Length=310, Percent_Identity=30.3225806451613, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24649528, Length=310, Percent_Identity=30.3225806451613, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24649524, Length=310, Percent_Identity=30.3225806451613, Blast_Score=114, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 32236; Mature: 32236

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSIKIKLQYLLPKQGLTQLAGWGANKQGGWLTQLVIKAFARYYKVDMKEAQDPEFSAY
CCCCEEEEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RTFNEFFVRPLRAGVRPVVAEENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAG
HHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEEEEEC
NYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTAANVPNLFA
CEEEEEEECCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
RNERVICIFDTAFGPMAQILVGATIVGSIETVWAGTITPPREGVIRRWTYPQAGCEGAIT
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHEEECCCCCCCCCCEEECCCCCCCCCCEEE
LEKGQEMGRFKLGSTVINLFAEGKVYFAPQLNSGAVTRMGEVLAEAVPTTPSY
ECCCCCCCCEEHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDSIKIKLQYLLPKQGLTQLAGWGANKQGGWLTQLVIKAFARYYKVDMKEAQDPEFSAY
CCCCEEEEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RTFNEFFVRPLRAGVRPVVAEENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAG
HHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEEEEEC
NYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTAANVPNLFA
CEEEEEEECCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
RNERVICIFDTAFGPMAQILVGATIVGSIETVWAGTITPPREGVIRRWTYPQAGCEGAIT
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHEEECCCCCCCCCCEEECCCCCCCCCCEEE
LEKGQEMGRFKLGSTVINLFAEGKVYFAPQLNSGAVTRMGEVLAEAVPTTPSY
ECCCCCCCCEEHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA