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The map label for this gene is yjdC [H]

Identifier: 153948866

GI number: 153948866

Start: 4156464

End: 4157039

Strand: Direct

Name: yjdC [H]

Synonym: YpsIP31758_3685

Alternate gene names: 153948866

Gene position: 4156464-4157039 (Clockwise)

Preceding gene: 153946977

Following gene: 153949969

Centisome position: 88.0

GC content: 49.65

Gene sequence:

>576_bases
GTGCAACGTGAACAAGTTTTAAGTAACGCACTCAATCTGTTAGAACAGCAAGGGTTGGCAAATACCACGCTAGAAATGCT
CGCCAAAGCGCTGTCAGTTGAAGTCAGTGACCTGACACGCTTTTGGCCAGATCGTGAGGCATTGCTCTACGATTGCCTGC
GCTATCACAGCCAACAGATTGATACCTGGCGGCGGCAGCTACAGCTGGACGAGACCCTATCACCGCAGCAAAAGCTACTG
GCACGCTATCAAACACTGAGCGAGCAAGTGCAAAACCAGCGCTACCCCGGCTGCTTGTTTATTGCTGCCTGCAGTTTCTA
TCCTGATACTGAGCACCCTATTCACCAATTGGCTGAACAGCAGAAACAGGCCTCGCTGCACTATACAAAAGCCTTGCTGC
AAGAGATGGATGCTGACGATGCCGATATGGTCGCACAGCAGATGGAGTTGATTCTGGAGGGTTGCCTGAGCAAATTACTG
ATTAAACGTCAGTTGGCAGATGTTGAGGTTGCCAAATGTTTAGCGGAAGACATATTAACAGTGGCCCAATGCCGTAAAAA
TGGTGCCTTAAGCTGA

Upstream 100 bases:

>100_bases
GGTGCCCGTAAAGATAGGGCTATTGGCAAAAAATGGGTCATTTGCAGAATAAGCAGCGGTCAACCACACTTGCCAGATAA
AGAGGTTGGAGGAGAGTAAC

Downstream 100 bases:

>100_bases
GTCTTTCTAGCGTAAACTTTACGGCAAGCGCCGGGCGATTTTTCCTGCTTTTGCCTGAAAAGAGAGCGATCAACATAGTT
TTAGCGGTTTTAGGTTATAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQIDTWRRQLQLDETLSPQQKLL
ARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLL
IKRQLADVEVAKCLAEDILTVAQCRKNGALS

Sequences:

>Translated_191_residues
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQIDTWRRQLQLDETLSPQQKLL
ARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLL
IKRQLADVEVAKCLAEDILTVAQCRKNGALS
>Mature_191_residues
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQIDTWRRQLQLDETLSPQQKLL
ARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLL
IKRQLADVEVAKCLAEDILTVAQCRKNGALS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=191, Percent_Identity=64.9214659685864, Blast_Score=258, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21866; Mature: 21866

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQI
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DTWRRQLQLDETLSPQQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHH
QKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLLIKRQLADVEVAKCLAEDILT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAQCRKNGALS
HHHHHHCCCCC
>Mature Secondary Structure
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQI
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DTWRRQLQLDETLSPQQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHH
QKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLLIKRQLADVEVAKCLAEDILT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAQCRKNGALS
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]