Click here to switch to the map view.

The map label for this gene is 153935613

Identifier: 153935613

GI number: 153935613

Start: 1239155

End: 1239949

Strand: Reverse

Name: 153935613

Synonym: CLC_1200

Alternate gene names: NA

Gene position: 1239949-1239155 (Counterclockwise)

Preceding gene: 153937700

Following gene: 153934602

Centisome position: 32.97

GC content: 23.02

Gene sequence:

>795_bases
ATGTTTTGTTCTAATTGTGGAAACAAGCTTTCAGAAGATGCTCAGTTTTGTACAAACTGTGGTTCTCCTGTATTAGGTAA
TAAACCAACAAATTTTAAAGATGGAAAAGCTAAAAATGAATTTACTAATTTTTTAAATTTTTTCATTAATTCTTTAAAAA
ATCCTGTAGATAAATTTAATGAATCTATAAAAAATATGAGCCTTTCTATGGTATCTTTATACTTTATAATTCTTACATTA
ATATCTGGACTTATTACTTCTTTTTCAATAAAGAAGTTTATATCTGATTTTATAGCTTTCTTTTCAAGTTTTATAGATAA
TGCTTTATCTTTTCACGAAAGAGCGGTACTATCCACAGAAATTCAAGGAATGATATCTAAAATGATACCAGTTTCAAAAC
TATTATTTTGGTATATTTTAGGCATTGTGTTGTTCTATGGATTAATAATATTAATTATGTATGTAATAGTTACTTTAATA
ATGAAAAAACAAATTAAGTTTGAAAGTTATTTAAAGGTTTCTTTAATATCTCTTGTAATATATTCAAATTTTACAGTATT
GGCAGTTATAGTAGCATTTTTAAGCTTTATACTTTCAATGCTTATATACTCTTTGGCTCATATACTTGTTATAGTTGTAT
TATATAATGGTTTTAAAAATATAATGGAAGATGATTCTAAAACTCCGTACATATTCTCATTTTCTTATATTATAGCTACT
AATTTATCCTATTATTTTATATTTAAGTCTATAATGCAATACTACCTTATGGCTATAAAAAATAATATTATTTAA

Upstream 100 bases:

>100_bases
TCATACATTTTATTTTAAAAAATTATCCTTTATGTTATAATTTAGTAGCACTATTTGTTAACTTTTTCTTAATACTATTA
ATACTAAAAGAGGTGATTTT

Downstream 100 bases:

>100_bases
GATTCACATAAGAACAAAGGATTTACTGCTAAGTATAAAAATATTCCTTAGCAATAAATCCTTTTTAATTTGAAAAATTG
ATATATATATTTTCTCCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MFCSNCGNKLSEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL
ISGLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI
MKKQIKFESYLKVSLISLVIYSNFTVLAVIVAFLSFILSMLIYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT
NLSYYFIFKSIMQYYLMAIKNNII

Sequences:

>Translated_264_residues
MFCSNCGNKLSEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL
ISGLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI
MKKQIKFESYLKVSLISLVIYSNFTVLAVIVAFLSFILSMLIYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT
NLSYYFIFKSIMQYYLMAIKNNII
>Mature_264_residues
MFCSNCGNKLSEDAQFCTNCGSPVLGNKPTNFKDGKAKNEFTNFLNFFINSLKNPVDKFNESIKNMSLSMVSLYFIILTL
ISGLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGIVLFYGLIILIMYVIVTLI
MKKQIKFESYLKVSLISLVIYSNFTVLAVIVAFLSFILSMLIYSLAHILVIVVLYNGFKNIMEDDSKTPYIFSFSYIIAT
NLSYYFIFKSIMQYYLMAIKNNII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30203; Mature: 30203

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA