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The map label for this gene is ydaM [H]

Identifier: 153931104

GI number: 153931104

Start: 2547691

End: 2548965

Strand: Reverse

Name: ydaM [H]

Synonym: CLB_2413

Alternate gene names: 153931104

Gene position: 2548965-2547691 (Counterclockwise)

Preceding gene: 153933344

Following gene: 153934271

Centisome position: 65.98

GC content: 26.27

Gene sequence:

>1275_bases
TTGAATATTATAAATGGAATAGTTCATTATAGCTCTAAAGCAATAACATACATAGTTTATTTCATATCCATGTATTATCT
TATAATTTCTCTTTTTGGTATATATAGAAAAAAGAATAATAAGAATATTGGTGATAAAACGAAATTTGCTCTTATTGTAG
CAGCACATAATGAAGAACTAGTTATAGGTAACATAATAGAAAGCTTAAAAATGATGGATTATGATAAAAAGCTATATGAC
ATTTTTGTAATTGCAGATAATTGTACAGATAAAACTGCTGAGATTGCAAGAAAAAAAGGGGCTATTGTACGGGAAAGATT
TGACAAGAAACGAAGAGGAAAAGGTTATGCATTAGAATGGATGTTTAATATAATATTTAAAATGGAAAAAAAATATGATG
CCATAGCAGTGTTTGATGCAGATAATTTAGTTCATAAAAATTTTTTAAAAGAAATGAATAAAAAAATGTGTAAAGGATAT
AAGGTAGTTCAGGGTTATTTAGATAGTAAGAATCCTGAGGATACTTGGATAACAGGAAGTTATTCTATTGCATTTTGGAG
TTGTAATAGAATGTTCCAACTTGCAAGATATAATTTAGGATTATCTAGTCAATTGGGTGGCACTGGTTTTTGTATAGATA
CAGATATATTAAAAGAACTTGGCTGGGGTGCTACTTGTCTTACAGAGGATTTAGAGTTTTCTTGCAAAATTATATTAAAT
GGATACAAAGTGGGGTGGGCCCATGATGCCATAATATATGATGAAAAACCTTTAACCTTATCTCAATCATGGAGGCAAAG
AAAAAGATGGATGCAAGGTTTTGCAGATGTATCTAGTAGATATTTTTTTAAGCTTATGAAAAAAGCTATTAAAAATTTTA
ATTTTACTGCTTTTGATTGTGCACTTTATAGTATACAACCTTTTGTAGCTATACTATTAGGTTTGTCAGCCATAATAGGT
TTGTTTCAATATGTTATTAAAGCAACAAACATAGTTAATAATTTTAATAATATAGTTTATTCTATAGATTTTAATTTGAT
AACTATATTAATAATTTTATTTTCATTGTTTCAAATATTATATACACCTTTAATATTGATTTTAGAAAAAAAATTTACAT
TTAAAGTGTTATTATATTATATAGTTTATCCTATATATGCTATAACGTGGTTTCCTATTTCAATACAAGGAATTATGGAT
AAAAACAATAAAGAATGGAGTCATACAATTCATACTAGAAATATGAATATAGATGAACTAGAAAAAGTTAACTAG

Upstream 100 bases:

>100_bases
TTAAGTATGCATTAAGTAATTTATAATATTTATTTGCAATAATATATAGTAATTAACTAGTATTTATGCTAAAATATTTT
TGAACCGAGGGGGGATACTA

Downstream 100 bases:

>100_bases
AGGAAAGCATAGCTTTCCTTTTTTTGCTTTTTTTATGATGAATTTATAATGTATAAATTAAATAATAATTATAATAATTA
ATAATTTTAAGAGGAAATAG

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MNIINGIVHYSSKAITYIVYFISMYYLIISLFGIYRKKNNKNIGDKTKFALIVAAHNEELVIGNIIESLKMMDYDKKLYD
IFVIADNCTDKTAEIARKKGAIVRERFDKKRRGKGYALEWMFNIIFKMEKKYDAIAVFDADNLVHKNFLKEMNKKMCKGY
KVVQGYLDSKNPEDTWITGSYSIAFWSCNRMFQLARYNLGLSSQLGGTGFCIDTDILKELGWGATCLTEDLEFSCKIILN
GYKVGWAHDAIIYDEKPLTLSQSWRQRKRWMQGFADVSSRYFFKLMKKAIKNFNFTAFDCALYSIQPFVAILLGLSAIIG
LFQYVIKATNIVNNFNNIVYSIDFNLITILIILFSLFQILYTPLILILEKKFTFKVLLYYIVYPIYAITWFPISIQGIMD
KNNKEWSHTIHTRNMNIDELEKVN

Sequences:

>Translated_424_residues
MNIINGIVHYSSKAITYIVYFISMYYLIISLFGIYRKKNNKNIGDKTKFALIVAAHNEELVIGNIIESLKMMDYDKKLYD
IFVIADNCTDKTAEIARKKGAIVRERFDKKRRGKGYALEWMFNIIFKMEKKYDAIAVFDADNLVHKNFLKEMNKKMCKGY
KVVQGYLDSKNPEDTWITGSYSIAFWSCNRMFQLARYNLGLSSQLGGTGFCIDTDILKELGWGATCLTEDLEFSCKIILN
GYKVGWAHDAIIYDEKPLTLSQSWRQRKRWMQGFADVSSRYFFKLMKKAIKNFNFTAFDCALYSIQPFVAILLGLSAIIG
LFQYVIKATNIVNNFNNIVYSIDFNLITILIILFSLFQILYTPLILILEKKFTFKVLLYYIVYPIYAITWFPISIQGIMD
KNNKEWSHTIHTRNMNIDELEKVN
>Mature_424_residues
MNIINGIVHYSSKAITYIVYFISMYYLIISLFGIYRKKNNKNIGDKTKFALIVAAHNEELVIGNIIESLKMMDYDKKLYD
IFVIADNCTDKTAEIARKKGAIVRERFDKKRRGKGYALEWMFNIIFKMEKKYDAIAVFDADNLVHKNFLKEMNKKMCKGY
KVVQGYLDSKNPEDTWITGSYSIAFWSCNRMFQLARYNLGLSSQLGGTGFCIDTDILKELGWGATCLTEDLEFSCKIILN
GYKVGWAHDAIIYDEKPLTLSQSWRQRKRWMQGFADVSSRYFFKLMKKAIKNFNFTAFDCALYSIQPFVAILLGLSAIIG
LFQYVIKATNIVNNFNNIVYSIDFNLITILIILFSLFQILYTPLILILEKKFTFKVLLYYIVYPIYAITWFPISIQGIMD
KNNKEWSHTIHTRNMNIDELEKVN

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 49381; Mature: 49381

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIINGIVHYSSKAITYIVYFISMYYLIISLFGIYRKKNNKNIGDKTKFALIVAAHNEEL
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCE
VIGNIIESLKMMDYDKKLYDIFVIADNCTDKTAEIARKKGAIVRERFDKKRRGKGYALEW
EHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH
MFNIIFKMEKKYDAIAVFDADNLVHKNFLKEMNKKMCKGYKVVQGYLDSKNPEDTWITGS
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECC
YSIAFWSCNRMFQLARYNLGLSSQLGGTGFCIDTDILKELGWGATCLTEDLEFSCKIILN
EEEEEEEHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHCCCCCEEECCCCCCEEEEEEE
GYKVGWAHDAIIYDEKPLTLSQSWRQRKRWMQGFADVSSRYFFKLMKKAIKNFNFTAFDC
CEEECEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
ALYSIQPFVAILLGLSAIIGLFQYVIKATNIVNNFNNIVYSIDFNLITILIILFSLFQIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH
YTPLILILEKKFTFKVLLYYIVYPIYAITWFPISIQGIMDKNNKEWSHTIHTRNMNIDEL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHEEEECCCCHHHH
EKVN
HCCC
>Mature Secondary Structure
MNIINGIVHYSSKAITYIVYFISMYYLIISLFGIYRKKNNKNIGDKTKFALIVAAHNEEL
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCE
VIGNIIESLKMMDYDKKLYDIFVIADNCTDKTAEIARKKGAIVRERFDKKRRGKGYALEW
EHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH
MFNIIFKMEKKYDAIAVFDADNLVHKNFLKEMNKKMCKGYKVVQGYLDSKNPEDTWITGS
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECC
YSIAFWSCNRMFQLARYNLGLSSQLGGTGFCIDTDILKELGWGATCLTEDLEFSCKIILN
EEEEEEEHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHCCCCCEEECCCCCCEEEEEEE
GYKVGWAHDAIIYDEKPLTLSQSWRQRKRWMQGFADVSSRYFFKLMKKAIKNFNFTAFDC
CEEECEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
ALYSIQPFVAILLGLSAIIGLFQYVIKATNIVNNFNNIVYSIDFNLITILIILFSLFQIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH
YTPLILILEKKFTFKVLLYYIVYPIYAITWFPISIQGIMDKNNKEWSHTIHTRNMNIDEL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHEEEECCCCHHHH
EKVN
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]