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The map label for this gene is ybfM [H]

Identifier: 152977291

GI number: 152977291

Start: 3669990

End: 3670604

Strand: Reverse

Name: ybfM [H]

Synonym: Bcer98_3614

Alternate gene names: 152977291

Gene position: 3670604-3669990 (Counterclockwise)

Preceding gene: 152977299

Following gene: 152977288

Centisome position: 89.81

GC content: 34.63

Gene sequence:

>615_bases
ATGGAATGGATTCATGAGTTATTTCAGCAATATGGCTACTATGTTGTACTTGTTGGATTACTGTTAGAGTATATCGCTCT
ACCATTTCCGGGAGAGCCGACATTAGCCTATGCAGGATATTTAGCACATACAGGAGATTTAAACTTATTTGTATTAATTA
TTTTGTCATTTATTGGGACAAGTATTGGAATGACGATTCAATACTTTTTAGGAAATAAGCTTGGGATGCCTTTTGTACAA
AAGTATGGAAAGTATGTCTTTTTAACACAAAGAAAAATTGATTTAACAAGAATGTGGTTTGATAAGTATGGATATTTCTT
AATCTTTATTGGCTTCTTTATCCCAGGTGTCCGTCACTTTACCGGATATTTTGGAGGAATTATTAATCTACCATTCCGTC
GCTTTGCAATTACAATTTATGCAGGTGCTTTATTCTGGGTGTTGTTCTTTTTGCTTGGTGGCTATTGGTTAGGTGGAAAT
TTACATGACATCTTTGGTGCACTGGGACAGCATAGCGGGAAAATCATTTTTGGAATTGCTTTGATTGTGGCAATTACCTT
ATGTATTCGTTTCCGTAAGCAATTGAAACGTGTATTTGTTCAAAATGCAAATTAA

Upstream 100 bases:

>100_bases
TGTAAGCTGTTATGATAGTTATTTCGACAATTTTTTTATACAATAATAGTAACAATGGGTACGTGATTCATGTTGATAGG
ATTAGAAAAGGAGAGATAAC

Downstream 100 bases:

>100_bases
TGTGAGGACCATTCCATGTTGGAAATTAGAAAAAGCAATGCTTTTGTGGGAGCATTGCTTTTTTATTTTATTCCGCTATT
TTAGGAAAGAAAGGAAGATA

Product: SNARE associated Golgi protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGYLAHTGDLNLFVLIILSFIGTSIGMTIQYFLGNKLGMPFVQ
KYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHFTGYFGGIINLPFRRFAITIYAGALFWVLFFLLGGYWLGGN
LHDIFGALGQHSGKIIFGIALIVAITLCIRFRKQLKRVFVQNAN

Sequences:

>Translated_204_residues
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGYLAHTGDLNLFVLIILSFIGTSIGMTIQYFLGNKLGMPFVQ
KYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHFTGYFGGIINLPFRRFAITIYAGALFWVLFFLLGGYWLGGN
LHDIFGALGQHSGKIIFGIALIVAITLCIRFRKQLKRVFVQNAN
>Mature_204_residues
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGYLAHTGDLNLFVLIILSFIGTSIGMTIQYFLGNKLGMPFVQ
KYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHFTGYFGGIINLPFRRFAITIYAGALFWVLFFLLGGYWLGGN
LHDIFGALGQHSGKIIFGIALIVAITLCIRFRKQLKRVFVQNAN

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=161, Percent_Identity=31.055900621118, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23418; Mature: 23418

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGYLAHTGDLNLFVLIILSFIGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
SIGMTIQYFLGNKLGMPFVQKYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHF
HHHHHHHHHHCCCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGYFGGIINLPFRRFAITIYAGALFWVLFFLLGGYWLGGNLHDIFGALGQHSGKIIFGIA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHCCCCCHHHHHH
LIVAITLCIRFRKQLKRVFVQNAN
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGYLAHTGDLNLFVLIILSFIGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
SIGMTIQYFLGNKLGMPFVQKYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHF
HHHHHHHHHHCCCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGYFGGIINLPFRRFAITIYAGALFWVLFFLLGGYWLGGNLHDIFGALGQHSGKIIFGIA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHCCCCCHHHHHH
LIVAITLCIRFRKQLKRVFVQNAN
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]