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The map label for this gene is ysdC [H]

Identifier: 152976954

GI number: 152976954

Start: 3323571

End: 3324656

Strand: Reverse

Name: ysdC [H]

Synonym: Bcer98_3257

Alternate gene names: 152976954

Gene position: 3324656-3323571 (Counterclockwise)

Preceding gene: 152976955

Following gene: 152976952

Centisome position: 81.35

GC content: 39.32

Gene sequence:

>1086_bases
ATGCAAAAGTTAGATAAAACATTGACAATGCTGAAAGAACTAACAGATGCGCGCGGTATTGCGGGAAATGAGCGTGAGCC
ACGTGAAGTAATGAAAAAGTACATTGAACCGTTTGCGGATGAACTTTCTACAGATAATTTAGGAAGTTTAGTTGCTAAAA
AGGTAGGAGAAGAAAACGGTCCGAAAATTATGGTAGCTGGTCATTTAGATGAAGTGGGCTTTATGATTACACAAATCGAT
AATAAAGGTTTTCTTCGTTTTCAAACGGTAGGTGGCTGGTGGTCACAAGTTATGCTTGCACAGCGTGTAACAATTATAAC
GTGCAAAGGGGATATAACAGGTGTAATTGGTTCAAAACCACCACACATTTTATCAGCAGAAGCTCGTAAAAAACCAGTTG
AAATTAAGGACATGTTCATCGATATCGGTGCTTCTAGCAAAGAAGAAGCAATGGAATGGGGCGTACGACCAGGAGATCAA
GTTGTACCATATTTCGAATTCCAAGTGATGAAAAATGAAAAACTGCTGCTTGCAAAAGCGTGGGATAACCGCATTGGTTG
TGCTATTACGATTGATGTATTAAGACAATTAAAAGATGAAAAACATCCAAACATTGTATACGGTGTTGGAACAGTTCAAG
AAGAAGTAGGACTGCGCGGTGCGAAAACGTCAGCAAACTATATTAAACCCGACATTGCGTTTGCAGTAGATGTTGGAATT
GCTGGCGATACACCGGGAGTAACAGAAAAAGAAGCGCAAAGTAAAATGGGAGATGGGCCACAAATCATTTTATATGATGC
ATCTGTCATTGGTCATACTGGGCTTCGTAATTTCGTAGTGGATGTTGCTGATGAGCTAGATATTCCATATCAATACGACT
TTGTAGCTGGAGGCGGAACTGATGCAGGGGCGATTCATATTTCTGTAAATGGTATTCCATCTATGGCAATTACAATTGCA
ACTCGTTACATTCACTCTCATGCTGCTATGTTGCATCGTGACGATTATGAAAATGCAGTGAAACTCATTGTAGAAGTGAT
TAAACGTCTTGATAAAGAGGCTGTACATAATATTACATTTGATTAA

Upstream 100 bases:

>100_bases
AAAGAAAATCTCCACTGATTAAAGTTTCACTTTGTTTTTTTGAATATTTCAATTTACTTATTATATAATAGGTTAAATGA
AGAAAAAGGAGGGATTGACA

Downstream 100 bases:

>100_bases
ACAAAAAGCGAAGAGATGTCTCTTCGCTTTTTGTTATTTAAAAAGGGCGCTCTAATCCAGCTGCAGTATGTACTCCTAAA
ATGATTAAACGCGTTAATTG

Product: cellulase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MQKLDKTLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
NKGFLRFQTVGGWWSQVMLAQRVTIITCKGDITGVIGSKPPHILSAEARKKPVEIKDMFIDIGASSKEEAMEWGVRPGDQ
VVPYFEFQVMKNEKLLLAKAWDNRIGCAITIDVLRQLKDEKHPNIVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTEKEAQSKMGDGPQIILYDASVIGHTGLRNFVVDVADELDIPYQYDFVAGGGTDAGAIHISVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFD

Sequences:

>Translated_361_residues
MQKLDKTLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
NKGFLRFQTVGGWWSQVMLAQRVTIITCKGDITGVIGSKPPHILSAEARKKPVEIKDMFIDIGASSKEEAMEWGVRPGDQ
VVPYFEFQVMKNEKLLLAKAWDNRIGCAITIDVLRQLKDEKHPNIVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTEKEAQSKMGDGPQIILYDASVIGHTGLRNFVVDVADELDIPYQYDFVAGGGTDAGAIHISVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFD
>Mature_361_residues
MQKLDKTLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
NKGFLRFQTVGGWWSQVMLAQRVTIITCKGDITGVIGSKPPHILSAEARKKPVEIKDMFIDIGASSKEEAMEWGVRPGDQ
VVPYFEFQVMKNEKLLLAKAWDNRIGCAITIDVLRQLKDEKHPNIVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTEKEAQSKMGDGPQIILYDASVIGHTGLRNFVVDVADELDIPYQYDFVAGGGTDAGAIHISVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFD

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=355, Percent_Identity=41.4084507042254, Blast_Score=288, Evalue=5e-79,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=33.2386363636364, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI87082417, Length=343, Percent_Identity=31.1953352769679, Blast_Score=164, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39692; Mature: 39692

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLDKTLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
PKIMVAGHLDEVGFMITQIDNKGFLRFQTVGGWWSQVMLAQRVTIITCKGDITGVIGSKP
CEEEEEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCEEEEEECCCEEECCCCCC
PHILSAEARKKPVEIKDMFIDIGASSKEEAMEWGVRPGDQVVPYFEFQVMKNEKLLLAKA
CCEEECHHHCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEC
WDNRIGCAITIDVLRQLKDEKHPNIVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
CCCCCCEEEEHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
AGDTPGVTEKEAQSKMGDGPQIILYDASVIGHTGLRNFVVDVADELDIPYQYDFVAGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
DAGAIHISVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITF
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
D
C
>Mature Secondary Structure
MQKLDKTLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
PKIMVAGHLDEVGFMITQIDNKGFLRFQTVGGWWSQVMLAQRVTIITCKGDITGVIGSKP
CEEEEEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCEEEEEECCCEEECCCCCC
PHILSAEARKKPVEIKDMFIDIGASSKEEAMEWGVRPGDQVVPYFEFQVMKNEKLLLAKA
CCEEECHHHCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEC
WDNRIGCAITIDVLRQLKDEKHPNIVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
CCCCCCEEEEHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
AGDTPGVTEKEAQSKMGDGPQIILYDASVIGHTGLRNFVVDVADELDIPYQYDFVAGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
DAGAIHISVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITF
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]