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The map label for this gene is clpX [H]

Identifier: 152976887

GI number: 152976887

Start: 3240154

End: 3241413

Strand: Reverse

Name: clpX [H]

Synonym: Bcer98_3186

Alternate gene names: 152976887

Gene position: 3241413-3240154 (Counterclockwise)

Preceding gene: 152976888

Following gene: 152976886

Centisome position: 79.31

GC content: 38.41

Gene sequence:

>1260_bases
ATGTTTAAATTTAACGATGAGAAAGGACAATTGAAGTGTTCTTTCTGTGGTAAAACACAAACGCAAGTTCGAAAGCTTGT
TGCAGGACCAGGTGTCTATATTTGTGATGAGTGTATTGAGCTTTGTACGGAAATTGTACAAGAGGAGCTTGCGAAAGACG
AAGAAGTAGAATTCAAAGATGTACCGAAACCAATAGAGATTCGTGAAATTTTGGATGAGTATGTCATCGGGCAAGATAAT
GCGAAGAAAGCACTAGCGGTAGCGGTATATAATCATTACAAACGCATTAATTCTAACAGTAAAATCGATGATGTAGAATT
GGCGAAGAGTAATATCGCACTTATTGGGCCGACAGGTAGCGGTAAAACGTTATTAGCTCAAACATTGGCGCGTATTTTAA
ATGTTCCGTTTGCGATTGCGGATGCAACATCTTTAACAGAGGCGGGATATGTAGGGGAAGATGTAGAAAATATCTTGCTT
AAACTCATTCAAGCTGCTGATTATGATGTTGAGAAAGCAGAAAAAGGAATTATTTACATTGATGAGATTGATAAAGTGGC
ACGTAAGTCAGAAAATCCATCCATTACGCGTGATGTATCTGGTGAGGGTGTGCAACAGGCACTTCTGAAAATTTTAGAAG
GTACTGTAGCGAGCGTTCCGCCTCAAGGGGGGCGTAAACATCCACATCAAGAATTTATTCAAATTGATACAACGAATATT
CTATTTATTTGCGGTGGTGCGTTTGACGGTATTGAGCCAATTATTAAACGTCGCCTTGGTGAGAAAGTAATTGGATTTGG
TTCTGAGAAGAAAAATGCGGAAGTAAATGAAAAGCATGTTTTATCTCACGTATTGCCAGAAGACCTGTTACGATTTGGTT
TAATTCCAGAATTTATCGGTCGTCTACCAGTTATTGCAAACCTAGAGCCGCTTGATGAAGATGCTCTTGTTGATATTTTA
ACAAAACCGAAAAATGCACTTGTAAAGCAGTTCCAAAAATTACTGGAGCTTGATGACGTTGAATTAGAGTTTGAAGAAGG
CGCACTAATTGAGATTGCGAAAAAAGCAATTGAACGTAAAACAGGTGCTCGTGGACTTCGTTCTATTATTGAAGGCTTAA
TGCTTGACGTCATGTTTGAACTTCCATCTCGTAAAGATATCGAGAAGTGTATTTTAACAAGAGAGACAGTAGCAAATAAT
GCACCACCAAAATTGGTGTTACAAGATGGTACTGTACTCGATACAAAAACATCTGCATAA

Upstream 100 bases:

>100_bases
ATTTCTCGCCACGTAGTGACATAATATGTATTTACATACGATACATTTATCGTGTACATACGAAGGCAAGATATTAGCAC
TTTGTAAGGGGTGTGAAAAT

Downstream 100 bases:

>100_bases
TGTTTAAAGGAAGAAACAGCAATTTTTGTAATTGCTGTTTCTTCTTATGTTTAGCGCGATTCCTCTCCGGAAATACTAAA
GAGTAAAAACGTAGCGGGAG

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKDVPKPIEIREILDEYVIGQDN
AKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLIPEFIGRLPVIANLEPLDEDALVDIL
TKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRKDIEKCILTRETVANN
APPKLVLQDGTVLDTKTSA

Sequences:

>Translated_419_residues
MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKDVPKPIEIREILDEYVIGQDN
AKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLIPEFIGRLPVIANLEPLDEDALVDIL
TKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRKDIEKCILTRETVANN
APPKLVLQDGTVLDTKTSA
>Mature_419_residues
MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKDVPKPIEIREILDEYVIGQDN
AKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLIPEFIGRLPVIANLEPLDEDALVDIL
TKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLDVMFELPSRKDIEKCILTRETVANN
APPKLVLQDGTVLDTKTSA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=333, Percent_Identity=50.1501501501502, Blast_Score=310, Evalue=2e-84,
Organism=Escherichia coli, GI1786642, Length=409, Percent_Identity=61.8581907090465, Blast_Score=515, Evalue=1e-147,
Organism=Escherichia coli, GI1790366, Length=103, Percent_Identity=45.6310679611651, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71982908, Length=309, Percent_Identity=46.6019417475728, Blast_Score=277, Evalue=7e-75,
Organism=Caenorhabditis elegans, GI71982905, Length=311, Percent_Identity=46.9453376205788, Blast_Score=276, Evalue=1e-74,
Organism=Caenorhabditis elegans, GI71988663, Length=406, Percent_Identity=37.6847290640394, Blast_Score=245, Evalue=2e-65,
Organism=Caenorhabditis elegans, GI71988660, Length=260, Percent_Identity=38.8461538461538, Blast_Score=173, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6319704, Length=412, Percent_Identity=39.0776699029126, Blast_Score=262, Evalue=9e-71,
Organism=Drosophila melanogaster, GI24648289, Length=319, Percent_Identity=49.5297805642633, Blast_Score=298, Evalue=4e-81,
Organism=Drosophila melanogaster, GI24648291, Length=319, Percent_Identity=49.5297805642633, Blast_Score=298, Evalue=4e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 46267; Mature: 46267

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKD
CCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHC
VPKPIEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEECCCCC
GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI
CHHHHHHHHHHHHCCCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEE
DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHEEECCCEE
LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLIPEFIG
EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHC
RLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERK
CCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
TGARGLRSIIEGLMLDVMFELPSRKDIEKCILTRETVANNAPPKLVLQDGTVLDTKTSA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCC
>Mature Secondary Structure
MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKD
CCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHC
VPKPIEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEECCCCC
GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI
CHHHHHHHHHHHHCCCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEE
DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHEEECCCEE
LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLIPEFIG
EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHC
RLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERK
CCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
TGARGLRSIIEGLMLDVMFELPSRKDIEKCILTRETVANNAPPKLVLQDGTVLDTKTSA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA