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The map label for this gene is radC [C]

Identifier: 152976871

GI number: 152976871

Start: 3218824

End: 3219381

Strand: Reverse

Name: radC [C]

Synonym: Bcer98_3170

Alternate gene names: 152976871

Gene position: 3219381-3218824 (Counterclockwise)

Preceding gene: 152976872

Following gene: 152976870

Centisome position: 78.77

GC content: 42.47

Gene sequence:

>558_bases
ATGAACGGTATTCGTGATGTTTTGAAGGAAGAACAACCACGTGAACGTTTAATTTCGGAAGGAGCAAGTAGTTTATCAAA
CCGGGAACTTCTGGCGATTTTACTAAGAACAGGATCAAAGGAGGAATCGGTATTAACATTGGCAGACAAAATTTTACGCC
ATTTTGATGGTTTGCGAATGTTAAGAGATGCTACGATGGAAGAAATAACAAGTATTCATGGTGTCGGAGTAGCCAAGGCC
TCTCAACTCATCGCCGCCTTCGAACTCGGGAGAAGAATGGTGCGTTTAGAGTACCAGCATCGGTATAGCATTCGAAGTCC
GGAAGATTGTGCAAGTTATATGATGGAAGAAATGCGTTTTTTACAGCAGGAGAATTTCGTTTGTTTATATTTAAATACAA
AGAATCAAGTCATGCATCGGCAGACGGTGTTTATTGGCAGCTTAAATGCCTCAATTGTTCATCCGCGTGAGGTGTTTAAA
GAAGCTTTTCGCCGCGCAGCTGCCTCTATTATATGTCTGCATAATCATCCTTCAGGAGTGCGCCTGCAAGGTGCGTAA

Upstream 100 bases:

>100_bases
CACGTCTCGTTCGCGAATTGAAACAGTTTGATAGCGGTGCATCCCATGCGTGAATTTGCATGGGGTTTTCTTTGCGGAAA
AAATAAGAAGGAGTGACAAG

Downstream 100 bases:

>100_bases
TTTTAGCGTTTTCTTAGAAAACTAGAACTCCTTACAATGTTCTATGGTCAGCATCTTACCTTGAGGGGAAACCTATAGAG
GGAACATAGCATGATGTGAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNGIRDVLKEEQPRERLISEGASSLSNRELLAILLRTGSKEESVLTLADKILRHFDGLRMLRDATMEEITSIHGVGVAKA
SQLIAAFELGRRMVRLEYQHRYSIRSPEDCASYMMEEMRFLQQENFVCLYLNTKNQVMHRQTVFIGSLNASIVHPREVFK
EAFRRAAASIICLHNHPSGVRLQGA

Sequences:

>Translated_185_residues
MNGIRDVLKEEQPRERLISEGASSLSNRELLAILLRTGSKEESVLTLADKILRHFDGLRMLRDATMEEITSIHGVGVAKA
SQLIAAFELGRRMVRLEYQHRYSIRSPEDCASYMMEEMRFLQQENFVCLYLNTKNQVMHRQTVFIGSLNASIVHPREVFK
EAFRRAAASIICLHNHPSGVRLQGA
>Mature_185_residues
MNGIRDVLKEEQPRERLISEGASSLSNRELLAILLRTGSKEESVLTLADKILRHFDGLRMLRDATMEEITSIHGVGVAKA
SQLIAAFELGRRMVRLEYQHRYSIRSPEDCASYMMEEMRFLQQENFVCLYLNTKNQVMHRQTVFIGSLNASIVHPREVFK
EAFRRAAASIICLHNHPSGVRLQGA

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=167, Percent_Identity=37.125748502994, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788997, Length=77, Percent_Identity=41.5584415584416, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788312, Length=67, Percent_Identity=44.7761194029851, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI2367100, Length=67, Percent_Identity=44.7761194029851, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 21114; Mature: 21114

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIRDVLKEEQPRERLISEGASSLSNRELLAILLRTGSKEESVLTLADKILRHFDGLRM
CCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LRDATMEEITSIHGVGVAKASQLIAAFELGRRMVRLEYQHRYSIRSPEDCASYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LQQENFVCLYLNTKNQVMHRQTVFIGSLNASIVHPREVFKEAFRRAAASIICLHNHPSGV
HHHCCEEEEEECCCCHHHHHHHHEEECCCCCEECHHHHHHHHHHHHHHHEEEEECCCCCC
RLQGA
EECCC
>Mature Secondary Structure
MNGIRDVLKEEQPRERLISEGASSLSNRELLAILLRTGSKEESVLTLADKILRHFDGLRM
CCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LRDATMEEITSIHGVGVAKASQLIAAFELGRRMVRLEYQHRYSIRSPEDCASYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LQQENFVCLYLNTKNQVMHRQTVFIGSLNASIVHPREVFKEAFRRAAASIICLHNHPSGV
HHHCCEEEEEECCCCHHHHHHHHEEECCCCCEECHHHHHHHHHHHHHHHEEEEECCCCCC
RLQGA
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA