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The map label for this gene is yrrB [H]

Identifier: 152976809

GI number: 152976809

Start: 3148532

End: 3149191

Strand: Reverse

Name: yrrB [H]

Synonym: Bcer98_3107

Alternate gene names: 152976809

Gene position: 3149191-3148532 (Counterclockwise)

Preceding gene: 152976810

Following gene: 152976808

Centisome position: 77.05

GC content: 37.42

Gene sequence:

>660_bases
ATGTCAAATAAGCTTGAAATAGGCATTCGATATATGCAAGAAGGAAATTGGGAAGAAGCAGCCAAAAACTTTACAGAGGC
AATTGAAGAAAATCCAAAAGATGCTCTAGGATATATTAACTTTGCCAATTTACTAGATGTGTTAGGCGATAGCGAGCGTG
CAATTTTATTTTATAAACGTGCATTAGAGTTAGATGAAAAATCAGCTACTGCCTATTATGGACTTGGGAACATATATTAT
AGTCGAGAGCAATTCCAAGAAGCAAAAGCAATGTTTGAACAGGCAATGCAAGGTGGTTTGCAATCAGCTGATATCGTATT
TATGCTTGGGATTACACATGTGCAGCTTGGAAATGATCGCCTTGCGTTGCCATTTCTACAAAGAGCTGCGGAATTGGATG
AAATGGATGTCGAGGCAGCATTTCAATGCGGATTATGCCTTGCGCGATTAGAGCATGTTAAAGAGGCGAAACCGTATTTT
GAAAAGGTATTACAAATGGATAAAGAACATGCTGATGCGTATTATAATTTAGGTGTTGCTTACGTGTTTGAAGAGAATAA
GGAAAAGGCGCTTGCTTTATTTAAAAAAGCAACGAAAATCCAGCCAGATCACTTTTTAGCTGGGAATGGTATTCGTTTGT
TAGAACAAGAAAGTAAATAA

Upstream 100 bases:

>100_bases
CTCTGCCGATTAGCGGTCAGGGGTTTCTTTTTTAAAGAGCGAATTTTTGTTCGCTTACAAAATAGAATCTTTGTTATAAT
TTGTTGTAGAGGTGAAGAAC

Downstream 100 bases:

>100_bases
AAACAGCATTAATGAGCAGTTCCCCTCCATCTAAAGGTCAGTTAGGTGGGGGCTACTGCTCATTAGAGTACAGAAGTCGG
AAAGGAGTAGCAGAGGAACG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSNKLEIGIRYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDEKSATAYYGLGNIYY
SREQFQEAKAMFEQAMQGGLQSADIVFMLGITHVQLGNDRLALPFLQRAAELDEMDVEAAFQCGLCLARLEHVKEAKPYF
EKVLQMDKEHADAYYNLGVAYVFEENKEKALALFKKATKIQPDHFLAGNGIRLLEQESK

Sequences:

>Translated_219_residues
MSNKLEIGIRYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDEKSATAYYGLGNIYY
SREQFQEAKAMFEQAMQGGLQSADIVFMLGITHVQLGNDRLALPFLQRAAELDEMDVEAAFQCGLCLARLEHVKEAKPYF
EKVLQMDKEHADAYYNLGVAYVFEENKEKALALFKKATKIQPDHFLAGNGIRLLEQESK
>Mature_218_residues
SNKLEIGIRYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDEKSATAYYGLGNIYYS
REQFQEAKAMFEQAMQGGLQSADIVFMLGITHVQLGNDRLALPFLQRAAELDEMDVEAAFQCGLCLARLEHVKEAKPYFE
KVLQMDKEHADAYYNLGVAYVFEENKEKALALFKKATKIQPDHFLAGNGIRLLEQESK

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=206, Percent_Identity=27.6699029126214, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI32307148, Length=206, Percent_Identity=27.6699029126214, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI167466175, Length=183, Percent_Identity=25.6830601092896, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI167466177, Length=183, Percent_Identity=25.6830601092896, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI301336134, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=199, Percent_Identity=27.1356783919598, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319589, Length=163, Percent_Identity=28.2208588957055, Blast_Score=63, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6319387, Length=177, Percent_Identity=25.4237288135593, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24656717, Length=217, Percent_Identity=26.7281105990783, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI18110006, Length=217, Percent_Identity=26.7281105990783, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17647755, Length=206, Percent_Identity=28.1553398058252, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585827, Length=206, Percent_Identity=28.1553398058252, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585829, Length=206, Percent_Identity=28.1553398058252, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 24926; Mature: 24794

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKLEIGIRYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKR
CCCCCEEHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHH
ALELDEKSATAYYGLGNIYYSREQFQEAKAMFEQAMQGGLQSADIVFMLGITHVQLGNDR
HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCC
LALPFLQRAAELDEMDVEAAFQCGLCLARLEHVKEAKPYFEKVLQMDKEHADAYYNLGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEE
YVFEENKEKALALFKKATKIQPDHFLAGNGIRLLEQESK
EEEECCHHHHHHHHHHHHCCCCCCEECCCCEEEEECCCC
>Mature Secondary Structure 
SNKLEIGIRYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKR
CCCCEEHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHH
ALELDEKSATAYYGLGNIYYSREQFQEAKAMFEQAMQGGLQSADIVFMLGITHVQLGNDR
HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCC
LALPFLQRAAELDEMDVEAAFQCGLCLARLEHVKEAKPYFEKVLQMDKEHADAYYNLGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEE
YVFEENKEKALALFKKATKIQPDHFLAGNGIRLLEQESK
EEEECCHHHHHHHHHHHHCCCCCCEECCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]