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The map label for this gene is psd

Identifier: 152976768

GI number: 152976768

Start: 3108589

End: 3109374

Strand: Reverse

Name: psd

Synonym: Bcer98_3064

Alternate gene names: 152976768

Gene position: 3109374-3108589 (Counterclockwise)

Preceding gene: 152976769

Following gene: 152976766

Centisome position: 76.08

GC content: 37.66

Gene sequence:

>786_bases
TTGCGACGTACATTATATCGACTGATGATTGAACTTACAAATGGGCGTTTTACTTCTTATATATTACGTAAATTTGCACA
GTCTCGTTTCAGTTCTATTATTATTCCCTCTTATGCAAAAGTGTTTCAAATTAATCAAGATGAGATGGAAAAAGATTTAA
AAGAATATCGAACGTTACATGAGTTATTTACACGTAAATTAAAAGAAGGAAAGCGAATGATTCATGCAGAGGCAGCAGCT
GTTGTTAGCCCTGTTGATGGAATTTTTGCAGATTTTGGACCGATTGAAGAATCGAAAACATTTGATATTAAAGGGAAGCG
CTATTCGATTGTAGATATGCTTGGCAATGAAGAAAGAGCGAGTCGTTATGCCGGCGGTACATATGTGGTGATTTATTTAA
GTCCAAGTCATTATCATCGCATTCATAGTCCACTTTCCGGTACTGTGACAGAGCGGTTTGAGCTAGGGGGAAAATCATAT
CCTGTAAATGCAGCAGGCATGAAATATGGGAAAGAACCTTTGTCAAAGAATTATCGTTCTGTTACAGAAGTAGATAGTGA
AGGAAAGCGTATGGCGCTAGTAAAAGTAGGAGCTATGTTTGTAAACAGTATTGAACTTCTTCATAAACGAAACACTGTTC
AAAAAGGTGAAGAGATGGCATACTTTACATTTGGGTCGACAGTTGTTCTGCTGTTTGAAAAAGGAATGATCGAAGCTGTT
TCAACGTTAACAAGCGGTCAAGAACTCCGTGTAGGCGAAAAGATTGCAACTCGATTAACCTCATAG

Upstream 100 bases:

>100_bases
CGTAAAGGTGTTTATTTAGATAAACGGCATGATATCGCAAGAAAAGAAGGGAAAGCTATATGTAATTGTTATTTTAAGAA
TGATTAGGAGGTTTCGCAGT

Downstream 100 bases:

>100_bases
TAGTGAACAGTAGAAGTCTATAATAAGCTTGTATGGACTCAAGGAAGTGAGATGTGTCAATGTGTCTAATGAAAATTCCT
GAAAGTTGGAAAGTTCATTT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRFSSIIIPSYAKVFQINQDEMEKDLKEYRTLHELFTRKLKEGKRMIHAEAAA
VVSPVDGIFADFGPIEESKTFDIKGKRYSIVDMLGNEERASRYAGGTYVVIYLSPSHYHRIHSPLSGTVTERFELGGKSY
PVNAAGMKYGKEPLSKNYRSVTEVDSEGKRMALVKVGAMFVNSIELLHKRNTVQKGEEMAYFTFGSTVVLLFEKGMIEAV
STLTSGQELRVGEKIATRLTS

Sequences:

>Translated_261_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRFSSIIIPSYAKVFQINQDEMEKDLKEYRTLHELFTRKLKEGKRMIHAEAAA
VVSPVDGIFADFGPIEESKTFDIKGKRYSIVDMLGNEERASRYAGGTYVVIYLSPSHYHRIHSPLSGTVTERFELGGKSY
PVNAAGMKYGKEPLSKNYRSVTEVDSEGKRMALVKVGAMFVNSIELLHKRNTVQKGEEMAYFTFGSTVVLLFEKGMIEAV
STLTSGQELRVGEKIATRLTS
>Mature_261_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRFSSIIIPSYAKVFQINQDEMEKDLKEYRTLHELFTRKLKEGKRMIHAEAAA
VVSPVDGIFADFGPIEESKTFDIKGKRYSIVDMLGNEERASRYAGGTYVVIYLSPSHYHRIHSPLSGTVTERFELGGKSY
PVNAAGMKYGKEPLSKNYRSVTEVDSEGKRMALVKVGAMFVNSIELLHKRNTVQKGEEMAYFTFGSTVVLLFEKGMIEAV
STLTSGQELRVGEKIATRLTS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=268, Percent_Identity=29.1044776119403, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI1790604, Length=274, Percent_Identity=31.3868613138686, Blast_Score=129, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI71980843, Length=241, Percent_Identity=28.2157676348548, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71980840, Length=241, Percent_Identity=28.2157676348548, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321609, Length=182, Percent_Identity=31.8681318681319, Blast_Score=100, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24649526, Length=272, Percent_Identity=29.0441176470588, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24649528, Length=272, Percent_Identity=29.0441176470588, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24649524, Length=272, Percent_Identity=29.0441176470588, Blast_Score=87, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_BACCN (A7GT32)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001376285.1
- STRING:   A7GT32
- EnsemblBacteria:   EBBACT00000036062
- GeneID:   5345449
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_3064
- eggNOG:   COG0688
- GeneTree:   EBGT00050000001988
- HOGENOM:   HBG302256
- OMA:   NKREWSI
- ProtClustDB:   PRK03140
- BioCyc:   BCER315749:BCER98_3064-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 29597; Mature: 29597

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLYRLMIELTNGRFTSYILRKFAQSRFSSIIIPSYAKVFQINQDEMEKDLKEYRTLH
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRMIHAEAAAVVSPVDGIFADFGPIEESKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEECCCEEEEHHHHCCHHHH
SRYAGGTYVVIYLSPSHYHRIHSPLSGTVTERFELGGKSYPVNAAGMKYGKEPLSKNYRS
HHCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHH
VTEVDSEGKRMALVKVGAMFVNSIELLHKRNTVQKGEEMAYFTFGSTVVLLFEKGMIEAV
HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCEEEEEEHHHHHHHH
STLTSGQELRVGEKIATRLTS
HHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRTLYRLMIELTNGRFTSYILRKFAQSRFSSIIIPSYAKVFQINQDEMEKDLKEYRTLH
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRMIHAEAAAVVSPVDGIFADFGPIEESKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEECCCEEEEHHHHCCHHHH
SRYAGGTYVVIYLSPSHYHRIHSPLSGTVTERFELGGKSYPVNAAGMKYGKEPLSKNYRS
HHCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHH
VTEVDSEGKRMALVKVGAMFVNSIELLHKRNTVQKGEEMAYFTFGSTVVLLFEKGMIEAV
HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCEEEEEEHHHHHHHH
STLTSGQELRVGEKIATRLTS
HHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA