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The map label for this gene is dppB [H]

Identifier: 152974032

GI number: 152974032

Start: 197189

End: 198106

Strand: Direct

Name: dppB [H]

Synonym: Bcer98_0186

Alternate gene names: 152974032

Gene position: 197189-198106 (Clockwise)

Preceding gene: 152974031

Following gene: 152974033

Centisome position: 4.82

GC content: 37.36

Gene sequence:

>918_bases
GTGTATGTTGTAAAGAAACTATCAGTTATGGTGTTTACACTATGGGTTATTGTTACAGCTACTTTTTTAATCATGCATAT
TATACCTGGTGATCCGTTTTCATCAGATGCAAAGATTTTTCCTGAGGAAGTTGTCCAAAATATGAGGGCTAAATATCATC
TTGATGAACCTTTATGGAATCAATATGTAGCGTATTTGGATGGGATTATTCATTTTGACTTTGGAGAATCTGTTCAGTCA
ACGGGTCAAGGAGTGGCAGAAATCATAACAACTGGCTTTGGACCATCTGCTGTTATTGGATTACAAGCATTTGTTATTTC
GTTGTTAGTTGGAATTGCAGCTGGAACGTTTGCGGCTTTATATCATGGGAAAATCATTGACTATAGTGTGAGTCTACTAG
CGATTTTAGGGATCTCAATCCCAAGTTTCATCTTAGCACCGTTATTTATTCAGGTGTTTGCAATTCAACTTGAGCTGCTT
CCGGTTGCCTCTTGGGGAACATTTGCTCATACTGTATTACCTTCCTTTGCGTTAGCGCTTGGGCCAATTGCTGTTATTAC
AAGATTTGTTCGTTCGAATATGATTGAAGTTTTACAAAGTGAGTATATTAAACTAGCACGTGCAAAAGGAATACCACTTC
GAACAATTATTATAAGACATGCGCTTCGAAATGCGATTGTTCCGGTTCTTACTTTTGTCGGACCACTTATGGCTGGTTTG
TTAACAGGAACCTTCGTGATTGAGAAAATATTTTCCATTCCAGGGTTAGGAAAATATTTTGTAGATAGTATTTTTAACCG
AGATTATCCAGTTATCATGGGAACCACTATTTTCTATAGTGCACTGCTCATTATATGTATTTTCGTTACGGATATCATTC
ATCGCATGATTGATCCGCGCATTCGTTCTATTACGTGA

Upstream 100 bases:

>100_bases
TTTTTAAGATCAAGGCTTTTTATATTGCGGATAAGGAGAGGAATTGGCAAAAAATCGCGAATAAAACAAAGTAAATTTAT
GTGTTTAGGGGGTTATTTTG

Downstream 100 bases:

>100_bases
GGAGGGAAATTGAAATGGGGGCTTACGAAATCGATGATCAGCTATTGACGGCTGAAGATAAGAAAGCATTAACTGCTAAT
AAAGAACAGCAAATGATTAG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MYVVKKLSVMVFTLWVIVTATFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGIIHFDFGESVQS
TGQGVAEIITTGFGPSAVIGLQAFVISLLVGIAAGTFAALYHGKIIDYSVSLLAILGISIPSFILAPLFIQVFAIQLELL
PVASWGTFAHTVLPSFALALGPIAVITRFVRSNMIEVLQSEYIKLARAKGIPLRTIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIICIFVTDIIHRMIDPRIRSIT

Sequences:

>Translated_305_residues
MYVVKKLSVMVFTLWVIVTATFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGIIHFDFGESVQS
TGQGVAEIITTGFGPSAVIGLQAFVISLLVGIAAGTFAALYHGKIIDYSVSLLAILGISIPSFILAPLFIQVFAIQLELL
PVASWGTFAHTVLPSFALALGPIAVITRFVRSNMIEVLQSEYIKLARAKGIPLRTIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIICIFVTDIIHRMIDPRIRSIT
>Mature_305_residues
MYVVKKLSVMVFTLWVIVTATFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGIIHFDFGESVQS
TGQGVAEIITTGFGPSAVIGLQAFVISLLVGIAAGTFAALYHGKIIDYSVSLLAILGISIPSFILAPLFIQVFAIQLELL
PVASWGTFAHTVLPSFALALGPIAVITRFVRSNMIEVLQSEYIKLARAKGIPLRTIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIICIFVTDIIHRMIDPRIRSIT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=303, Percent_Identity=41.2541254125413, Blast_Score=256, Evalue=9e-70,
Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=36.8421052631579, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=34.0298507462687, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1789888, Length=307, Percent_Identity=32.2475570032573, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787761, Length=313, Percent_Identity=31.9488817891374, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=27.7310924369748, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=31.1355311355311, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33606; Mature: 33606

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCC
>Mature Secondary Structure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HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]