| Definition | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 chromosome, complete genome. |
|---|---|
| Accession | NC_009648 |
| Length | 5,315,120 |
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The map label for this gene is helD [H]
Identifier: 152969548
GI number: 152969548
Start: 1125941
End: 1127995
Strand: Direct
Name: helD [H]
Synonym: KPN_00991
Alternate gene names: 152969548
Gene position: 1125941-1127995 (Clockwise)
Preceding gene: 152969545
Following gene: 152969550
Centisome position: 21.18
GC content: 57.81
Gene sequence:
>2055_bases ATGGAACTTAAAGCGACAACATTGGGCAAACGCATGGCTCAGCACCCTTATGATCGGGTGCAGCTACTGAACGCCGGGGT AAAAGTTTCCGGCGATCGTCATGAGTATCTTATCCCTTTCAATCAGTTATTGTCAGTGCATTGTAAGCGCGGTCTGGTCT GGGGCGAACTGGAGTTTGTGCTACCGGACGGGAAAGTCGTGCGTTTGCACGGTACCGAGTGGAGCGAAACGCAGCGCTTT TATCATCATTTACATACGCTCTGGCAGCAGTGGAGCACGGAGATGAGCGATATCGCCGCCGGCGTGCTGAAGCAGCAGCT GGCGACGATCGAGCACACTCGCGCAGAAGGCAAGTGGCTAACCCGTCAGCAGGTGGCGGATGTTCAGGATAATATACGCC ATGCGTTGACTGGTTTGCCGATGCCCACCAGTCGGCTTGATGCCTTTGATAACTGCCGGGAGCTGTGGCGGGAGTGTCAG CGCTGGTTAGGCGATATTGAAGCGACGCGTCTGGCCCATAACCAGGCCTTTACCGAGGCGATGCTGGAGCAATATCGCGA ATTTTTTGATAGCGTTGAGTCGTCCCCGCTCAATGCGTCACAAGCGCGTGCGGTAGTGAACGGCGAGCGCTCCCTGCTGG TGCTGGCGGGAGCGGGCAGCGGTAAAACCTCGGTGCTGGTGGCGCGAGCGGGCTGGCTGCTGGCGCGGGGAGAAGCCGCG GCAGATCAAATTTTGCTGCTGGCATTCGGCCGCCAGGCGGCGCAGGAAATGGATGAGCGGATCCGCGAGCGTCTGGCATC AGATGATATTACCGCGCGTACTTTCCATTCGCTGGCGTTGCATATTATTCAGCAGGGCAGCAAAAAAGTGCCCACTATCA GTAAGCTGGAAAGCGATACTGCGGCCCGCCGCGCATTGCTGCTGAAAAGCTGGCAAAAGCAGTGCCAGGAGAAAAAAGCG CAGGCGAAAGGTTGGCGCCTGTGGCTGGAAGAAGAGATGGGCTGGCAACTGCCGGAGGGGGACTTCTGGCAGGACAAAAA GGTGCAGCGGCGGATGGCCGGCCGGCTTGACCGCTGGGTGAGCCTGATGCGCATGCACGGCGGCTCCCAGGCGGAGATGA TTGCCGGGGCGCCGGAAGCGGTACGCGACCTGTTCAGTAAACGGGTGAAGCTGATGTCGCCTCTGATGAAAGACTGGAAA GCGGCGCTCAAGGCCGAGAATGCGGTCGATTTTTCCGGCCTGATCCATCAGGCGGTCAATATTCTCGATAAAGGCCGCTT CGTCAGCCCATGGAAACACATTCTGGTGGATGAATTTCAAGATATTTCGCCGCAGCGAGCCTCGCTGTTGGCCGCGTTAC GCCGGCAGAATAGCCAAACCACGCTCTTTGCCGTCGGGGATGACTGGCAGGCGATCTACCGGTTCAGCGGGGCGCAGCTT TCTCTGACCACCGCATTCAACCACTACTTTGGCGAAGGGGATTGCTGTGCGCTGGATACCACCTATCGCTTTAACGGGCG TATCGGCGAAATAGCCAATGGCTTTATCCAGCAAAATCCGCATCAGTTAAGCAAACCGCTGAACAGCCTTATGGCAGGTG ATAAAAAGGCCGTCACGCTGTTAGCCGACGACAAGCTGGACGATCTTCTGGATAAGCTGAGTGGTTACGTTAAGCCCGAG CAGCGCATCCTGCTGCTTGCCCGTTATCACCATCTGAAGCCTGAGGCGCTCAACAAAGCGGCGACGCGCTGGCCGCACCT GCAGCTTGATTTTATGACGATTCATGCCAGCAAAGGTCAGCAGGCTGACTTTGTCATTGTGTTGGGACTGCAGGAGGGGG AGGATGCGTTTCCGGCCCCGGCGCGCGAGTCGATTATGGAGCAGGCGCTCCTGCCGCAGCCGGAAGATTTTCCGGATGCG GAGGAGCGTAGACTGTTGTACGTGGCGCTCACCCGCGCTCGTCACCGGGTATGGCTGTTATTTAACAAGGCGCAACCTTC GCCGTTTGTCGAGATCCTGCAGGCGCTGGATGTGCCCATGGCCAGGAAGCCGTAA
Upstream 100 bases:
>100_bases TAATAAGACCTGATGATTGTAACGTTTTTTTGCGCTGGAGCACCTGGTCCGGGGCGGTTAAACTGAAAAACAATCCACCC TGATTGAAAATCGACATTAT
Downstream 100 bases:
>100_bases TCGCGGCTCGATTATTTCAGGCGCTCGGCAAGATAGCGTGGATAATCCGGGATCAGAATATCTAGCGGTTGACCGAAGTG CGGCGACTGGATAATAAAGT
Product: DNA helicase IV
Products: NA
Alternate protein names: 75 kDa helicase [H]
Number of amino acids: Translated: 684; Mature: 684
Protein sequence:
>684_residues MELKATTLGKRMAQHPYDRVQLLNAGVKVSGDRHEYLIPFNQLLSVHCKRGLVWGELEFVLPDGKVVRLHGTEWSETQRF YHHLHTLWQQWSTEMSDIAAGVLKQQLATIEHTRAEGKWLTRQQVADVQDNIRHALTGLPMPTSRLDAFDNCRELWRECQ RWLGDIEATRLAHNQAFTEAMLEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAA ADQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISKLESDTAARRALLLKSWQKQCQEKKA QAKGWRLWLEEEMGWQLPEGDFWQDKKVQRRMAGRLDRWVSLMRMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDWK AALKAENAVDFSGLIHQAVNILDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSQTTLFAVGDDWQAIYRFSGAQL SLTTAFNHYFGEGDCCALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKAVTLLADDKLDDLLDKLSGYVKPE QRILLLARYHHLKPEALNKAATRWPHLQLDFMTIHASKGQQADFVIVLGLQEGEDAFPAPARESIMEQALLPQPEDFPDA EERRLLYVALTRARHRVWLLFNKAQPSPFVEILQALDVPMARKP
Sequences:
>Translated_684_residues MELKATTLGKRMAQHPYDRVQLLNAGVKVSGDRHEYLIPFNQLLSVHCKRGLVWGELEFVLPDGKVVRLHGTEWSETQRF YHHLHTLWQQWSTEMSDIAAGVLKQQLATIEHTRAEGKWLTRQQVADVQDNIRHALTGLPMPTSRLDAFDNCRELWRECQ RWLGDIEATRLAHNQAFTEAMLEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAA ADQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISKLESDTAARRALLLKSWQKQCQEKKA QAKGWRLWLEEEMGWQLPEGDFWQDKKVQRRMAGRLDRWVSLMRMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDWK AALKAENAVDFSGLIHQAVNILDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSQTTLFAVGDDWQAIYRFSGAQL SLTTAFNHYFGEGDCCALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKAVTLLADDKLDDLLDKLSGYVKPE QRILLLARYHHLKPEALNKAATRWPHLQLDFMTIHASKGQQADFVIVLGLQEGEDAFPAPARESIMEQALLPQPEDFPDA EERRLLYVALTRARHRVWLLFNKAQPSPFVEILQALDVPMARKP >Mature_684_residues MELKATTLGKRMAQHPYDRVQLLNAGVKVSGDRHEYLIPFNQLLSVHCKRGLVWGELEFVLPDGKVVRLHGTEWSETQRF YHHLHTLWQQWSTEMSDIAAGVLKQQLATIEHTRAEGKWLTRQQVADVQDNIRHALTGLPMPTSRLDAFDNCRELWRECQ RWLGDIEATRLAHNQAFTEAMLEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAA ADQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISKLESDTAARRALLLKSWQKQCQEKKA QAKGWRLWLEEEMGWQLPEGDFWQDKKVQRRMAGRLDRWVSLMRMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDWK AALKAENAVDFSGLIHQAVNILDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSQTTLFAVGDDWQAIYRFSGAQL SLTTAFNHYFGEGDCCALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKAVTLLADDKLDDLLDKLSGYVKPE QRILLLARYHHLKPEALNKAATRWPHLQLDFMTIHASKGQQADFVIVLGLQEGEDAFPAPARESIMEQALLPQPEDFPDA EERRLLYVALTRARHRVWLLFNKAQPSPFVEILQALDVPMARKP
Specific function: Helicase IV catalyzes the unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand in a reaction that is dependent upon the hydrolysis of ATP [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787196, Length=684, Percent_Identity=78.3625730994152, Blast_Score=1132, Evalue=0.0, Organism=Escherichia coli, GI48994965, Length=357, Percent_Identity=26.3305322128852, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 - InterPro: IPR022161 - InterPro: IPR003661 [H]
Pfam domain/function: PF12462 Nucleolin_N; PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77642; Mature: 77642
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKATTLGKRMAQHPYDRVQLLNAGVKVSGDRHEYLIPFNQLLSVHCKRGLVWGELEFV CCCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCEEECCHHHHHHHHHHCCCEEEEEEEE LPDGKVVRLHGTEWSETQRFYHHLHTLWQQWSTEMSDIAAGVLKQQLATIEHTRAEGKWL ECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHH TRQQVADVQDNIRHALTGLPMPTSRLDAFDNCRELWRECQRWLGDIEATRLAHNQAFTEA HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH MLEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAA HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCEECCCHH ADQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISKLESDT HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AARRALLLKSWQKQCQEKKAQAKGWRLWLEEEMGWQLPEGDFWQDKKVQRRMAGRLDRWV HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH SLMRMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDWKAALKAENAVDFSGLIHQAVN HHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ILDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSQTTLFAVGDDWQAIYRFSGAQL HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCEE SLTTAFNHYFGEGDCCALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKAVTL EEEEHHHHHCCCCCEEEEECEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEE LADDKLDDLLDKLSGYVKPEQRILLLARYHHLKPEALNKAATRWPHLQLDFMTIHASKGQ EECCCHHHHHHHHHCCCCCHHHEEHHHHHHCCCHHHHHHHHHCCCCEEEEEEEEECCCCC QADFVIVLGLQEGEDAFPAPARESIMEQALLPQPEDFPDAEERRLLYVALTRARHRVWLL CCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCEEEEEEEHHCCCEEEEE FNKAQPSPFVEILQALDVPMARKP EECCCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure MELKATTLGKRMAQHPYDRVQLLNAGVKVSGDRHEYLIPFNQLLSVHCKRGLVWGELEFV CCCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCEEECCHHHHHHHHHHCCCEEEEEEEE LPDGKVVRLHGTEWSETQRFYHHLHTLWQQWSTEMSDIAAGVLKQQLATIEHTRAEGKWL ECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHH TRQQVADVQDNIRHALTGLPMPTSRLDAFDNCRELWRECQRWLGDIEATRLAHNQAFTEA HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH MLEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAA HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCEECCCHH ADQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISKLESDT HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AARRALLLKSWQKQCQEKKAQAKGWRLWLEEEMGWQLPEGDFWQDKKVQRRMAGRLDRWV HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH SLMRMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDWKAALKAENAVDFSGLIHQAVN HHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ILDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSQTTLFAVGDDWQAIYRFSGAQL HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCEE SLTTAFNHYFGEGDCCALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKAVTL EEEEHHHHHCCCCCEEEEECEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEE LADDKLDDLLDKLSGYVKPEQRILLLARYHHLKPEALNKAATRWPHLQLDFMTIHASKGQ EECCCHHHHHHHHHCCCCCHHHEEHHHHHHCCCHHHHHHHHHCCCCEEEEEEEEECCCCC QADFVIVLGLQEGEDAFPAPARESIMEQALLPQPEDFPDAEERRLLYVALTRARHRVWLL CCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCEEEEEEEHHCCCEEEEE FNKAQPSPFVEILQALDVPMARKP EECCCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2542273; 8905232; 9278503 [H]