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The map label for this gene is yccR [H]

Identifier: 152969545

GI number: 152969545

Start: 1122586

End: 1123203

Strand: Direct

Name: yccR [H]

Synonym: KPN_00988

Alternate gene names: 152969545

Gene position: 1122586-1123203 (Clockwise)

Preceding gene: 152969542

Following gene: 152969548

Centisome position: 21.12

GC content: 56.31

Gene sequence:

>618_bases
ATGATTAACAAAGGAATGATCATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGG
TCAACTGCATACTCGTCCGCTCTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGA
ACATTTATCTGAAGGCCTGCGAGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACAC
GGCCGCATAGTGCCGCTGAAGTATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCT
ACTGTCGTGGCAGAGTGCGCAGCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCT
TTCATATGGAATTGCAGCTGATTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGG
CTGAGGCTACGCGTAAATAATGCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGC
CGCCGCGCTCCCGACGCCACGGCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Upstream 100 bases:

>100_bases
GCATTCTGGTGAAAAAGTCGGCGAAAATCATCTTGCTGCTGCCCGGGAAGTCCCTTATGTTTTCTCTTAGCGGATCCGTT
AACAACTTAAGTTTAATTAC

Downstream 100 bases:

>100_bases
CGGAAAAGCCTTGTTATTCGGTTTGGGCGTGGACCCGTTGCTGCAGGCGGCAGATTTCAGGCAGCAGCGCCAGCAGCAGG
CCAATCTGCTGTAAGACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MINKGMIMRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRH
GRIVPLKYYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAW
LRLRVNNASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Sequences:

>Translated_205_residues
MINKGMIMRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRH
GRIVPLKYYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAW
LRLRVNNASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR
>Mature_205_residues
MINKGMIMRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRH
GRIVPLKYYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAW
LRLRVNNASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae DNA transformation protein tfoX [H]

Homologues:

Organism=Escherichia coli, GI1787193, Length=197, Percent_Identity=51.2690355329949, Blast_Score=204, Evalue=5e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007077
- InterPro:   IPR007076 [H]

Pfam domain/function: PF04994 TfoX_C; PF04993 TfoX_N [H]

EC number: NA

Molecular weight: Translated: 23305; Mature: 23305

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKGMIMRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKAC
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCEEEEEE
EQSAAYRVEHRNPLLTLRRHGRIVPLKYYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCR
CCCHHEEECCCCCEEEHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNNASLSLSVLLALEG
HHCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEEEHHHH
AIAGVHAAALPTPRRQELLEWAATR
HHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MINKGMIMRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKAC
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCEEEEEE
EQSAAYRVEHRNPLLTLRRHGRIVPLKYYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCR
CCCHHEEECCCCCEEEHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNNASLSLSVLLALEG
HHCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEEEHHHH
AIAGVHAAALPTPRRQELLEWAATR
HHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]