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The map label for this gene is ycaJ [H]

Identifier: 152969481

GI number: 152969481

Start: 1037277

End: 1038620

Strand: Direct

Name: ycaJ [H]

Synonym: KPN_00924

Alternate gene names: 152969481

Gene position: 1037277-1038620 (Clockwise)

Preceding gene: 152969480

Following gene: 152969482

Centisome position: 19.52

GC content: 60.71

Gene sequence:

>1344_bases
GTGAGCAATCTGTCGCTCGATTTTTCCGACAACGCGTTTCAACCTCTGGCCGCTCGCATGCGGCCAGAAAATTTAGCGCA
GTATATTGGCCAGCAGCACCTGCTGGCGCCGGGTAAACCCCTGCCGCGGGCCATTGAGGCCGGGCACCTGCATTCGATGA
TCCTCTGGGGGCCGCCGGGTACCGGCAAGACCACTCTGGCGGAAGTGATTGCCCGCTACGCCAGCGCCGATGTCGAACGG
ATCTCAGCGGTAACCTCCGGGGTGAAAGAGATTCGCGAGGCTATTGAGCGCGCGCGGCAGAATCGCAACGCCGGCCGGCG
GACCATCCTGTTTGTTGACGAAGTGCATCGCTTTAATAAAAGCCAGCAGGATGCCTTTCTGCCGCATATTGAAGACGGTA
CCATTACTTTTATTGGCGCGACCACCGAAAACCCCTCCTTTGAGCTTAACTCGGCGCTGCTCTCCCGCGCTCGCGTCTAC
TTACTGAAATCGCTCACCACCGACGATATCGAGCGGGTGCTTGACCAGGCGATGAACGATAAAACCCGCGGCTACGGCGG
CCAGGATATCATTTTGCCGGATGAGACCCGCAGGGCCATTGCCGAGCTAGTGAACGGCGACGCGCGGCGAGCGCTGAATA
CCCTGGAAATGATGGCCGATATGGCCGAAAGCGATGACTCGGGCAAGCGGGTGCTGAAGGCGGAACTGCTGACCGAGATC
GCTGGCGAGCGCAGCGCGCGCTTTGATAATAAAGGCGACCGGTTCTACGATTTGATTTCCGCCCTGCATAAGTCGGTGCG
CGGTAGCGCGCCGGATGCGGCACTTTACTGGTACGCGCGGATCATCACCGCCGGCGGCGATCCGCTGTACGTTGCCCGCC
GCTGTCTGGCGATTGCCTCGGAAGATGTCGGCAACGCCGACCCGCGGGCGATGCAGGTCGCCATTTCGGCGTGGGACTGC
TTTACCCGCGTCGGGCCGGCGGAAGGCGAACGGGCGATTGCCCAGGCCATTGTCTATCTGGCCTGCGCGCCGAAAAGCAA
CGCGGTGTACACCGCCTTCAAAGCGGCGCTGGCCGACGCGCGGGATCGTCCTGACTACGACGTTCCGGTGCATCTGCGCA
ATGCGCCGACGAAGCTGATGAAAGAGATGGGCTACGGCCAGGAGTATCGTTACGCTCATGACGAACCCAACGCCTACGCC
GCCGGCGAGCAGTACTTCCCGCAGGAAATGGCGCAAACGCGCTATTATCACCCGACAAACCGGGGGCTTGAGGGCAAAAT
TGGCGAAAAGCTCGCCTGGCTCGCTGAACAGGATCAAAATAGCCCGATAAAACGCTACCGCTAA

Upstream 100 bases:

>100_bases
AGCTGAAATCGCAGCAGAACGGCGCCGTCGACGCAGCTAAGTTCACCTTTACGCCGCCGAAAGGGGTGACGGTGGACGAT
CAACGTAAGTAGAGGCGAAA

Downstream 100 bases:

>100_bases
TTGAGGCGTTGCGGTAAGGTTATTACACTATTTCCGTGGTCGTAGTCTGCGGCCACTTTTCTTTTTTAATTCGATAAGCA
CAGGATAAGCATGCTCGATC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVER
ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKSLTTDDIERVLDQAMNDKTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMAESDDSGKRVLKAELLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARDRPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEQYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR

Sequences:

>Translated_447_residues
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVER
ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKSLTTDDIERVLDQAMNDKTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMAESDDSGKRVLKAELLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARDRPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEQYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>Mature_446_residues
SNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVERI
SAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
LKSLTTDDIERVLDQAMNDKTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMAESDDSGKRVLKAELLTEIA
GERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCF
TRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARDRPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAA
GEQYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.1363636363636, Blast_Score=307, Evalue=1e-83,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=36.5909090909091, Blast_Score=248, Evalue=9e-66,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=95.9731543624161, Blast_Score=884, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=448, Percent_Identity=39.9553571428571, Blast_Score=303, Evalue=4e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=212, Percent_Identity=27.8301886792453, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49695; Mature: 49563

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPG
CCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEECCCC
TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLDQAMND
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
KTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMAESDDSGKRVLKAELLTEI
CCCCCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
HCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
RDRPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFPQEMAQTRYYHPTN
CCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSPIKRYR
CCCCCCHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
SNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPG
CCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEECCCC
TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLDQAMND
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
KTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMAESDDSGKRVLKAELLTEI
CCCCCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
HCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
RDRPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFPQEMAQTRYYHPTN
CCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSPIKRYR
CCCCCCHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]