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The map label for this gene is ydcI [H]

Identifier: 151222181

GI number: 151222181

Start: 2186991

End: 2189141

Strand: Reverse

Name: ydcI [H]

Synonym: NWMN_1969

Alternate gene names: 151222181

Gene position: 2189141-2186991 (Counterclockwise)

Preceding gene: 151222182

Following gene: 151222180

Centisome position: 76.04

GC content: 33.47

Gene sequence:

>2151_bases
ATGGACAATCAATTGATTAATTCAATCATAGAGAAATATCAATTTAGTAAAAAACAAATTGAAGCAGTATTAACACTGCT
AGAAGAAAAAAATACAGTACCATTTATTGCGAGGTATCGAAAAGAGCAAACTGGTGGACTAGATGAAGTTCAAATAAAGC
AAATTGATGACGAATACCAATATATGGTCAATTTACAAAAACGTAAAGAAGAAGTTATCAAAAATATAGAACAGCAAGGA
TTACTTACTGAGGAATTAAAGAAGGATATTTTAAAACAGAACAAATTACAACGTGTTGAAGACCTATATAGGCCTTTTAA
ACAAAAGAAAAAGACAAGGGCAACTGAGGCGAAACGTAAAGGGTTAGAGCCATTAGCGATATGGATGAAGGCACGTAAAC
ATGAAGTCTCAATTGAAGAAAAAGCACAACAATTTATAAATGAAGAAGTGCAATCGGTTGAAGATGCTATCAAAGGTGCA
CAAGATATTATTGCGGAACAAATTTCAGATAATCCTAAATATAGAACAAAAATTTTAAAAGATATGTATCATCAAGGTGT
GTTAACTACATCTAAAAAGAAAAATGCTGAAGATGAAAAAGGTATTTTTGAAATGTACTATGCATATAGTGAGCCAATTA
AACGCATTGCTAATCATAGAGTTTTAGCTGTTAATCGTGGTGAAAAAGAGAAAGTATTATCTGTAAAGTTTGAATTCGAT
ACGACATCAGTAGAGGATTTCATTGCACGTCAAGAAATCAATCATAATAATGTAAATCGCAGTTATATTTTAGAGGCGAT
TAAAGATAGCTTGAAACGCTTAATTGTCCCTTCGATAGAGCGTGAAATCCATGCTGATTTAACTGAAAAAGCTGAAAATC
ATGCAATAGATGTTTTTAGTGAAAACTTAAGAAATCTATTACTGCAACCTCCAATGAAAGGTAAACAAATATTAGGCGTA
GATCCAGCATTTAGAACAGGTTGTAAATTAGCAGTCATTAACCCATTCGGTACTTTTATAGCAAAAGGTGTGATTTATCC
GCATCCACCAGTTTCTAAAAAAGAGGCAGCAGAGAAGGATTTTGTACAAATGGTTAAAGCGTATGATGTGCAATTAATTG
CAATTGGCAATGGTACTGCAAGTCGTGAAACAGAACAATTTGTTGCAGATTTAATTAAAAAGCATCAGTTGCCAGTACAA
TTCATCATTGTCAATGAAGCGGGCGCTTCAGTATACTCAGCATCAGAAATTGCTAGAGATGAATTTCCTGATTTTCAAGT
GGAAGAAAGAAGTGCCGTATCAATTGGACGACGCGTTCAAGATCCATTAAGTGAATTAGTTAAAATCGATCCTAAATCTA
TTGGTGTCGGACAATACCAGCATGATGTTAATCAAAAAGCACTAGAAAATGCATTAACTTTCGTTGTTGAAACAGCAGTT
AACCAAGTAGGTGTTGATGTCAATACAGCATCATCATCATTATTACAATATGTGTCTGGTCTAAGTTCGCAAATTGCTAA
AAATATAATTGCATATAGAGAAGAAAATGGCGCAATAAAGCATAATAAAGAGTTAAGCAAGATTAAGCGTTTGGGTGCTA
AAACTTTTGAGCAGAGTATAGGATTTTTAAGAATAGTAGACGGTTCAGAGCCATTGGATAATACATCGATTCATCCCGAA
AGCTATAAAGTAACGTATCAGTTATTAGATAAACTCGGATTTGGTGGCAATGATTTAGGTAGTGATGCATTAAAAGCTAA
ATTAAATTCATTGGATATGGATGAACTGGCGATTGAATTACAAGTCGGTGTACCTACATTAGAGGATATTATTAAATCCT
TGAAAGCACCTAATCGAGATCCAAGGGACGAGTTTGAAACACCAATCCTTAAATCCGATGTGCTATCAATTGAAGATTTA
CAAGAAGGAATGAAATTGAGTGGTACAGTTAGAAATGTAGTAGATTTTGGAGCATTTGTAGATATAGGTGTTAAACAAGA
TGGACTTGTCCATGTTTCGAAACTTTCTAAGAAGTTCGTAAAAAATCCAATGGATATTGTCAGTGTTGGTGATATCGTTG
ACGTTTGGATTTACAGTATTGACAAAAATAAAGACAAAGTATCATTAACGATGATTGATCCACATGAATAA

Upstream 100 bases:

>100_bases
TTGGAAGTGAAAATTACATTAAGTATCATACCTTAATAGAAGTATTTTAGAATATGTTAAAATAAATGAGTAAATTTAAG
AAAAAGTGTGGGTTAAGTAA

Downstream 100 bases:

>100_bases
TGACAAACTTCAGCGAATGGTTGAGAATCTTTCGGAAGAAAAATTTGGACGTACGTTTCGACATTGTGCATATTTTAATA
AAAGGTTACGTACAACAGGC

Product: S1 RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQG
LLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGV
DPAFRTGCKLAVINPFGTFIAKGVIYPHPPVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQ
FIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
NQVGVDVNTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPE
SYKVTYQLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDL
QEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE

Sequences:

>Translated_716_residues
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQG
LLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGV
DPAFRTGCKLAVINPFGTFIAKGVIYPHPPVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQ
FIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
NQVGVDVNTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPE
SYKVTYQLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDL
QEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE
>Mature_716_residues
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQG
LLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGV
DPAFRTGCKLAVINPFGTFIAKGVIYPHPPVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQ
FIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
NQVGVDVNTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPE
SYKVTYQLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDL
QEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=792, Percent_Identity=34.2171717171717, Blast_Score=416, Evalue=1e-116,
Organism=Homo sapiens, GI27597090, Length=589, Percent_Identity=24.6179966044143, Blast_Score=117, Evalue=4e-26,
Organism=Escherichia coli, GI87082262, Length=724, Percent_Identity=41.5745856353591, Blast_Score=551, Evalue=1e-158,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=45.3333333333333, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=755, Percent_Identity=30.4635761589404, Blast_Score=268, Evalue=5e-72,
Organism=Caenorhabditis elegans, GI17552892, Length=618, Percent_Identity=22.168284789644, Blast_Score=96, Evalue=9e-20,
Organism=Drosophila melanogaster, GI62484314, Length=741, Percent_Identity=34.412955465587, Blast_Score=402, Evalue=1e-112,
Organism=Drosophila melanogaster, GI24640080, Length=581, Percent_Identity=21.8588640275387, Blast_Score=100, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80936; Mature: 80936

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCHHHH
YMVNLQKRKEEVIKNIEQQGLLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGAQDIIAEQISDNPKYRTKILK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
HHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECC
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFS
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRNLLLQPPMKGKQILGVDPAFRTGCKLAVINPFGTFIAKGVIYPHPPVSKKEAAEKD
HHHHHHHCCCCCCCCEEECCCHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHH
FVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQFIIVNEAGASVYSASEIARD
HHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
EFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NQVGVDVNTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
GFLRIVDGSEPLDNTSIHPESYKVTYQLLDKLGFGGNDLGSDALKAKLNSLDMDELAIEL
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHEEEE
QVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLQEGMKLSGTVRNVVDFGAFV
EECCCHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHE
DIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE
EECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEEEECCCC
>Mature Secondary Structure
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCHHHH
YMVNLQKRKEEVIKNIEQQGLLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGAQDIIAEQISDNPKYRTKILK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
HHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECC
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFS
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRNLLLQPPMKGKQILGVDPAFRTGCKLAVINPFGTFIAKGVIYPHPPVSKKEAAEKD
HHHHHHHCCCCCCCCEEECCCHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHH
FVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQFIIVNEAGASVYSASEIARD
HHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
EFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NQVGVDVNTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
GFLRIVDGSEPLDNTSIHPESYKVTYQLLDKLGFGGNDLGSDALKAKLNSLDMDELAIEL
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHEEEE
QVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLQEGMKLSGTVRNVVDFGAFV
EECCCHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHE
DIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE
EECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]