Click here to switch to the map view.

The map label for this gene is yhcC [C]

Identifier: 150401715

GI number: 150401715

Start: 1351722

End: 1352747

Strand: Direct

Name: yhcC [C]

Synonym: Maeo_1293

Alternate gene names: 150401715

Gene position: 1351722-1352747 (Clockwise)

Preceding gene: 150401711

Following gene: 150401721

Centisome position: 86.12

GC content: 28.46

Gene sequence:

>1026_bases
TTGAATAATAATAGTAATAACAGTAATTGTAATAGTAATAATTACAATAACTACAATAATAGCAATATTATTAAAAAAAA
CATAGTAAATGAAATTTACTCCGAAGGATACAAAATAGCCCAATATGGAGTATATATGAAAAAATTAAAGCCCTACAAAA
CATTTAAAATACCAGTTGATGCGAGATGCACATGCCCAAATAAAGATGGTAATATTGATACAAAGGGGTGTATTTTTTGC
CCAAAAATGGGAAGGGATATTGTTCCGCCATATTGCAATTTAAAATATTCATTAAAAGAGCAAATCGAAACCCAATTAAA
GCACCATAAAATAAAAGGGCTAAAAAAATTTTATATATATTTTTATCCTGCAACAAATACCTATGGTGATTTAGATAAAT
TAAAAGAATTATGGGATTTTGCACTATCTTATAAAGATGTAATAGGGTTATCTTTGGGAACTAGACCAGACTGTTTAAAT
GGTGGGGTATTGGATATACTTGAAGAATATGTAAAACAGGGCAAAGAAATTTGGATAGATTTGGGCATTCAAACTATGAA
CCAAAAAACATTGGATTATTTAAATAGGGGGCATACCGTAGAGGATACAGAAAATGCCATTAAAAACTGTAAAAAAAGAA
ATATTTTTGTTTGCGGACATATTATATTGGGACTACCAAATGAAGGTTGGAAAAATATGATGGATACGGCATATATATTG
GGTGATTTAGAAATAGATGCCTTAAAAATATATCCGTTGTTGGTGCTTAAAAATACGGAATTAGAGCAATTATATTGGAA
GGGAAAATATAGAACACTTGATAAACAACAATATGTTAAACTTGTTTGTGATTTTTTAGAGAGGAGCTCCCCATATACAA
TTATTCAAAGAATATTAAAAGACAGAGCTCCGAAAAATATTGTAATATCTCCAAAATGGAATATAGGTAGGTTACCACTG
TTAAATGAAATATCAAATGAATTGAAAAAAAGAGGTACAAAACAAGGATTTTATTTTAATAAATAA

Upstream 100 bases:

>100_bases
TCCTATTTTATAATAATAATTGATATAATAACTATATTTAATATAATTAATCATAACGAATATACGAAGGTAGAATATTT
AATATTTGCGGGTGAATTTT

Downstream 100 bases:

>100_bases
AAACAAAAAAAGAAATAATAAATTAATTCATTAATAACCTATTATAATTTGTTTTTAATATAATCTACAACTTCCTCTAT
TTTTATTCTAATTTGCTCTC

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MNNNSNNSNCNSNNYNNYNNSNIIKKNIVNEIYSEGYKIAQYGVYMKKLKPYKTFKIPVDARCTCPNKDGNIDTKGCIFC
PKMGRDIVPPYCNLKYSLKEQIETQLKHHKIKGLKKFYIYFYPATNTYGDLDKLKELWDFALSYKDVIGLSLGTRPDCLN
GGVLDILEEYVKQGKEIWIDLGIQTMNQKTLDYLNRGHTVEDTENAIKNCKKRNIFVCGHIILGLPNEGWKNMMDTAYIL
GDLEIDALKIYPLLVLKNTELEQLYWKGKYRTLDKQQYVKLVCDFLERSSPYTIIQRILKDRAPKNIVISPKWNIGRLPL
LNEISNELKKRGTKQGFYFNK

Sequences:

>Translated_341_residues
MNNNSNNSNCNSNNYNNYNNSNIIKKNIVNEIYSEGYKIAQYGVYMKKLKPYKTFKIPVDARCTCPNKDGNIDTKGCIFC
PKMGRDIVPPYCNLKYSLKEQIETQLKHHKIKGLKKFYIYFYPATNTYGDLDKLKELWDFALSYKDVIGLSLGTRPDCLN
GGVLDILEEYVKQGKEIWIDLGIQTMNQKTLDYLNRGHTVEDTENAIKNCKKRNIFVCGHIILGLPNEGWKNMMDTAYIL
GDLEIDALKIYPLLVLKNTELEQLYWKGKYRTLDKQQYVKLVCDFLERSSPYTIIQRILKDRAPKNIVISPKWNIGRLPL
LNEISNELKKRGTKQGFYFNK
>Mature_341_residues
MNNNSNNSNCNSNNYNNYNNSNIIKKNIVNEIYSEGYKIAQYGVYMKKLKPYKTFKIPVDARCTCPNKDGNIDTKGCIFC
PKMGRDIVPPYCNLKYSLKEQIETQLKHHKIKGLKKFYIYFYPATNTYGDLDKLKELWDFALSYKDVIGLSLGTRPDCLN
GGVLDILEEYVKQGKEIWIDLGIQTMNQKTLDYLNRGHTVEDTENAIKNCKKRNIFVCGHIILGLPNEGWKNMMDTAYIL
GDLEIDALKIYPLLVLKNTELEQLYWKGKYRTLDKQQYVKLVCDFLERSSPYTIIQRILKDRAPKNIVISPKWNIGRLPL
LNEISNELKKRGTKQGFYFNK

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yhcC [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=163, Percent_Identity=27.6073619631902, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI2367204, Length=284, Percent_Identity=29.2253521126761, Blast_Score=160, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6325171, Length=166, Percent_Identity=29.5180722891566, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19920684, Length=160, Percent_Identity=28.75, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 39641; Mature: 39641

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNSNNSNCNSNNYNNYNNSNIIKKNIVNEIYSEGYKIAQYGVYMKKLKPYKTFKIPVD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCEEECCCC
ARCTCPNKDGNIDTKGCIFCPKMGRDIVPPYCNLKYSLKEQIETQLKHHKIKGLKKFYIY
CEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
FYPATNTYGDLDKLKELWDFALSYKDVIGLSLGTRPDCLNGGVLDILEEYVKQGKEIWID
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
LGIQTMNQKTLDYLNRGHTVEDTENAIKNCKKRNIFVCGHIILGLPNEGWKNMMDTAYIL
ECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHEE
GDLEIDALKIYPLLVLKNTELEQLYWKGKYRTLDKQQYVKLVCDFLERSSPYTIIQRILK
ECCEECEEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DRAPKNIVISPKWNIGRLPLLNEISNELKKRGTKQGFYFNK
CCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNNNSNNSNCNSNNYNNYNNSNIIKKNIVNEIYSEGYKIAQYGVYMKKLKPYKTFKIPVD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCEEECCCC
ARCTCPNKDGNIDTKGCIFCPKMGRDIVPPYCNLKYSLKEQIETQLKHHKIKGLKKFYIY
CEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
FYPATNTYGDLDKLKELWDFALSYKDVIGLSLGTRPDCLNGGVLDILEEYVKQGKEIWID
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
LGIQTMNQKTLDYLNRGHTVEDTENAIKNCKKRNIFVCGHIILGLPNEGWKNMMDTAYIL
ECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHEE
GDLEIDALKIYPLLVLKNTELEQLYWKGKYRTLDKQQYVKLVCDFLERSSPYTIIQRILK
ECCEECEEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DRAPKNIVISPKWNIGRLPLLNEISNELKKRGTKQGFYFNK
CCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]