BacMap

Definition	Methanococcus aeolicus Nankai-3, complete genome.
Accession	NC_009635
Length	1,569,500

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The map label for this gene is 150401625

Identifier: 150401625

GI number: 150401625

Start: 1270626

End: 1272110

Strand: Direct

Name: 150401625

Synonym: Maeo_1202

Alternate gene names: NA

Gene position: 1270626-1272110 (Clockwise)

Preceding gene: 150401624

Following gene: 150401626

Centisome position: 80.96

GC content: 32.66

Gene sequence:

>1485_bases
ATGGCAAGAGAACAGTGGAGCTCAAATATAGGATTTATACTGGCAGCAGTAGGTTCAGCTGTTGGCTTAGGAAATATATG
GAGATTTCCTTATGTGGTGTATAATAATGGGGGCGGAGCATTTTTAATACCTTATTTTATAGCTCTTTTATGTGTGGGCA
TATCTGTTATATTGCTTGAATTAGTTCTTGGGCATTCTACAAGAGGTTCTGCACCACTGGCATTTAGAAAACTGTCTGAG
AAATATGAATGGATAGGCTGGTTGGCTGTAATTTCTGGATTTACTATTACTACCTATTATATGGCAATAATCGGGTGGTG
TCTATATTATTTAGTTAATTTAATATTATATGGGTTTCCAACTGATTTTACAAGTTATTTTTTTGACGATATATTAAGGA
GCTCCATGGGGCCCGAAAATATATGGAGTTTTTCCACAGGAATATTGGCTTCTGTGGCATTGTTGTGGTTAATAAATTAT
GTTATTATAAGGTCAGGAGTAAAAAATGGGCTTGAAAAGGCAAATAAACTACTTATGCCATTATTATTTATTCTTACTTT
AATTCTCGTTCTTAGGGGTATAACATTACCTGGAGCCATGGATGGAATAAACTGGTATTTAACGCCAGATTTCTCTATTT
TATTAAATGCACAAGTATGGATTGCAGCATTTTCACAGATATTTTTCTCTTTGAGTTTGGGATATGGAATAATGATAGCT
TATGCAAGTTATCTTCCTAAAAAATCCGATTTAACAACAAATGCTTTTGCCATATCTCTTTTAAATTGCGGGTATTCTTT
TTTAGTGGGTTTTGCGGTATTTAGCACTTTGGGATATATGACATATACAACAGGAGTTCCATTAGATGAAATTGTAAGAG
ATGGAATAATTCTTGCATTTGTGGTATTTCCAAAAGCTTTATCTTTAATGCCAATTGGAGGATTTGAACTTGCAGTTGTA
TTTTTTATGGCTCTTGTGATTGCAGGTATTTCTTCCTCAGTATCTATTATAGAGGCAATAAATGCGGCTGTAATGGATAA
GTTTGGAATAAGTAGAAAAAAAGCTATTTTACCAATTGTAATTCTTGGATTTTTTGGTAGTTTATTATATACTACAAATG
CAGGTATCCACTGGATTAATATGGTTGATTATTTTACTTCTGGATATTTGCTTCCAATAGTAGGAATTACTGAAACGATA
GTGGCTATTTGGATATTTAATGGAAATAAATTTATAGATTATTTAAATAATCTATCAGATATGAAAATAGGAAAATATTG
GAAAATATCTGTGGGAATAATTACACCATTACTGTTGTTGGGCATTGTTGGTTCTGGCATATTGGCATTATATGATGCTC
CATATGGAGGATATGCATGGAAATATTTGGGTATTGTAGCAATTATGTCGGTTTTCAGTGTTTTATTGTCTTTCTTTATT
TCTAAAATTAAGAAGGGGGGAGTAAAAACAAAGCCTAAAAGGTGA

Upstream 100 bases:

>100_bases
ATATTATTGCTATATTTATTATCTATTTATGGCTCTAATAAATGAAATATAAAATATTAATAATAATATTAACATCATAG
TAAGGTATTGGCATGGTATA

Downstream 100 bases:

>100_bases
TTAAATGAATAATTCTGCAATAATTATGTTTTTATTTGGTGCAATAATACTATGGGGTGGTTCAATATATTTTCTTTGGA
AGTTATTGAGGAGACATAAA

Product: sodium:neurotransmitter symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MAREQWSSNIGFILAAVGSAVGLGNIWRFPYVVYNNGGGAFLIPYFIALLCVGISVILLELVLGHSTRGSAPLAFRKLSE
KYEWIGWLAVISGFTITTYYMAIIGWCLYYLVNLILYGFPTDFTSYFFDDILRSSMGPENIWSFSTGILASVALLWLINY
VIIRSGVKNGLEKANKLLMPLLFILTLILVLRGITLPGAMDGINWYLTPDFSILLNAQVWIAAFSQIFFSLSLGYGIMIA
YASYLPKKSDLTTNAFAISLLNCGYSFLVGFAVFSTLGYMTYTTGVPLDEIVRDGIILAFVVFPKALSLMPIGGFELAVV
FFMALVIAGISSSVSIIEAINAAVMDKFGISRKKAILPIVILGFFGSLLYTTNAGIHWINMVDYFTSGYLLPIVGITETI
VAIWIFNGNKFIDYLNNLSDMKIGKYWKISVGIITPLLLLGIVGSGILALYDAPYGGYAWKYLGIVAIMSVFSVLLSFFI
SKIKKGGVKTKPKR

Sequences:

>Translated_494_residues
MAREQWSSNIGFILAAVGSAVGLGNIWRFPYVVYNNGGGAFLIPYFIALLCVGISVILLELVLGHSTRGSAPLAFRKLSE
KYEWIGWLAVISGFTITTYYMAIIGWCLYYLVNLILYGFPTDFTSYFFDDILRSSMGPENIWSFSTGILASVALLWLINY
VIIRSGVKNGLEKANKLLMPLLFILTLILVLRGITLPGAMDGINWYLTPDFSILLNAQVWIAAFSQIFFSLSLGYGIMIA
YASYLPKKSDLTTNAFAISLLNCGYSFLVGFAVFSTLGYMTYTTGVPLDEIVRDGIILAFVVFPKALSLMPIGGFELAVV
FFMALVIAGISSSVSIIEAINAAVMDKFGISRKKAILPIVILGFFGSLLYTTNAGIHWINMVDYFTSGYLLPIVGITETI
VAIWIFNGNKFIDYLNNLSDMKIGKYWKISVGIITPLLLLGIVGSGILALYDAPYGGYAWKYLGIVAIMSVFSVLLSFFI
SKIKKGGVKTKPKR
>Mature_493_residues
AREQWSSNIGFILAAVGSAVGLGNIWRFPYVVYNNGGGAFLIPYFIALLCVGISVILLELVLGHSTRGSAPLAFRKLSEK
YEWIGWLAVISGFTITTYYMAIIGWCLYYLVNLILYGFPTDFTSYFFDDILRSSMGPENIWSFSTGILASVALLWLINYV
IIRSGVKNGLEKANKLLMPLLFILTLILVLRGITLPGAMDGINWYLTPDFSILLNAQVWIAAFSQIFFSLSLGYGIMIAY
ASYLPKKSDLTTNAFAISLLNCGYSFLVGFAVFSTLGYMTYTTGVPLDEIVRDGIILAFVVFPKALSLMPIGGFELAVVF
FMALVIAGISSSVSIIEAINAAVMDKFGISRKKAILPIVILGFFGSLLYTTNAGIHWINMVDYFTSGYLLPIVGITETIV
AIWIFNGNKFIDYLNNLSDMKIGKYWKISVGIITPLLLLGIVGSGILALYDAPYGGYAWKYLGIVAIMSVFSVLLSFFIS
KIKKGGVKTKPKR

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI7657587, Length=485, Percent_Identity=32.7835051546392, Blast_Score=250, Evalue=3e-66,
Organism=Homo sapiens, GI4507043, Length=496, Percent_Identity=31.6532258064516, Blast_Score=248, Evalue=1e-65,
Organism=Homo sapiens, GI21361581, Length=467, Percent_Identity=31.9057815845824, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI4507041, Length=495, Percent_Identity=30.5050505050505, Blast_Score=229, Evalue=5e-60,
Organism=Homo sapiens, GI171184408, Length=481, Percent_Identity=32.6403326403326, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI171184406, Length=481, Percent_Identity=32.6403326403326, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI171184404, Length=481, Percent_Identity=32.6403326403326, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI134304856, Length=530, Percent_Identity=31.1320754716981, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI6005715, Length=536, Percent_Identity=30.2238805970149, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI289191377, Length=498, Percent_Identity=31.1244979919679, Blast_Score=225, Evalue=7e-59,
Organism=Homo sapiens, GI289191351, Length=498, Percent_Identity=31.1244979919679, Blast_Score=225, Evalue=7e-59,
Organism=Homo sapiens, GI4557046, Length=498, Percent_Identity=31.1244979919679, Blast_Score=225, Evalue=7e-59,
Organism=Homo sapiens, GI197276623, Length=482, Percent_Identity=32.3651452282158, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI54607094, Length=482, Percent_Identity=32.3651452282158, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI188528618, Length=478, Percent_Identity=29.9163179916318, Blast_Score=216, Evalue=3e-56,
Organism=Homo sapiens, GI5032097, Length=485, Percent_Identity=30.5154639175258, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI92859670, Length=531, Percent_Identity=27.8719397363465, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI67782317, Length=512, Percent_Identity=27.34375, Blast_Score=191, Evalue=9e-49,
Organism=Homo sapiens, GI67782313, Length=495, Percent_Identity=27.8787878787879, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI67782315, Length=495, Percent_Identity=27.8787878787879, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI194018524, Length=536, Percent_Identity=29.4776119402985, Blast_Score=187, Evalue=3e-47,
Organism=Homo sapiens, GI218563756, Length=485, Percent_Identity=30.7216494845361, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI51468073, Length=515, Percent_Identity=25.0485436893204, Blast_Score=166, Evalue=5e-41,
Organism=Homo sapiens, GI300360519, Length=312, Percent_Identity=31.4102564102564, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI11181770, Length=520, Percent_Identity=25.9615384615385, Blast_Score=159, Evalue=8e-39,
Organism=Homo sapiens, GI289191353, Length=414, Percent_Identity=28.5024154589372, Blast_Score=155, Evalue=7e-38,
Organism=Homo sapiens, GI58219014, Length=303, Percent_Identity=31.6831683168317, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI33354281, Length=302, Percent_Identity=31.7880794701987, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI12408638, Length=505, Percent_Identity=25.1485148514851, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI218563758, Length=325, Percent_Identity=30.4615384615385, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI197276625, Length=140, Percent_Identity=38.5714285714286, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI21361693, Length=121, Percent_Identity=40.495867768595, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI55749589, Length=282, Percent_Identity=24.113475177305, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI226437581, Length=254, Percent_Identity=26.7716535433071, Blast_Score=84, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17555248, Length=511, Percent_Identity=31.5068493150685, Blast_Score=233, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI17554804, Length=502, Percent_Identity=30.6772908366534, Blast_Score=207, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI71995588, Length=473, Percent_Identity=31.7124735729387, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI25146584, Length=458, Percent_Identity=29.6943231441048, Blast_Score=197, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI212642127, Length=483, Percent_Identity=28.1573498964803, Blast_Score=178, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI133952791, Length=536, Percent_Identity=25.7462686567164, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI71998244, Length=471, Percent_Identity=29.0870488322718, Blast_Score=176, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17569475, Length=415, Percent_Identity=26.7469879518072, Blast_Score=138, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17535731, Length=373, Percent_Identity=26.0053619302949, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17542050, Length=304, Percent_Identity=31.5789473684211, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17542048, Length=399, Percent_Identity=23.8095238095238, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115534083, Length=356, Percent_Identity=22.4719101123595, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25143236, Length=556, Percent_Identity=22.841726618705, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24762620, Length=476, Percent_Identity=31.3025210084034, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI281364136, Length=523, Percent_Identity=29.2543021032505, Blast_Score=213, Evalue=2e-55,
Organism=Drosophila melanogaster, GI19921936, Length=478, Percent_Identity=30.7531380753138, Blast_Score=212, Evalue=4e-55,
Organism=Drosophila melanogaster, GI45550877, Length=517, Percent_Identity=29.7872340425532, Blast_Score=211, Evalue=7e-55,
Organism=Drosophila melanogaster, GI281365034, Length=485, Percent_Identity=29.4845360824742, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI281363702, Length=492, Percent_Identity=30.6910569105691, Blast_Score=208, Evalue=7e-54,
Organism=Drosophila melanogaster, GI24661428, Length=490, Percent_Identity=28.5714285714286, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24652942, Length=477, Percent_Identity=29.1404612159329, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI45551088, Length=477, Percent_Identity=29.1404612159329, Blast_Score=198, Evalue=7e-51,
Organism=Drosophila melanogaster, GI17136952, Length=499, Percent_Identity=27.8557114228457, Blast_Score=197, Evalue=9e-51,
Organism=Drosophila melanogaster, GI19921352, Length=491, Percent_Identity=27.4949083503055, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24584353, Length=491, Percent_Identity=27.4949083503055, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24639514, Length=493, Percent_Identity=29.2089249492901, Blast_Score=195, Evalue=6e-50,
Organism=Drosophila melanogaster, GI221329674, Length=493, Percent_Identity=29.2089249492901, Blast_Score=195, Evalue=7e-50,
Organism=Drosophila melanogaster, GI281364394, Length=479, Percent_Identity=28.6012526096033, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI28574704, Length=479, Percent_Identity=28.6012526096033, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI17136950, Length=479, Percent_Identity=28.6012526096033, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI28574702, Length=479, Percent_Identity=28.6012526096033, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24582567, Length=471, Percent_Identity=30.1486199575372, Blast_Score=193, Evalue=3e-49,
Organism=Drosophila melanogaster, GI45551183, Length=413, Percent_Identity=31.9612590799031, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI24639516, Length=513, Percent_Identity=28.0701754385965, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24654186, Length=351, Percent_Identity=33.6182336182336, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24639853, Length=492, Percent_Identity=27.6422764227642, Blast_Score=175, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24655079, Length=532, Percent_Identity=27.0676691729323, Blast_Score=172, Evalue=3e-43,
Organism=Drosophila melanogaster, GI281363700, Length=331, Percent_Identity=32.6283987915408, Blast_Score=152, Evalue=4e-37,
Organism=Drosophila melanogaster, GI24582569, Length=434, Percent_Identity=28.110599078341, Blast_Score=145, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 54329; Mature: 54198

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAREQWSSNIGFILAAVGSAVGLGNIWRFPYVVYNNGGGAFLIPYFIALLCVGISVILLE
CCCHHHCCCCHHHHHHHHHHHCCCCHHHCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHH
LVLGHSTRGSAPLAFRKLSEKYEWIGWLAVISGFTITTYYMAIIGWCLYYLVNLILYGFP
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TDFTSYFFDDILRSSMGPENIWSFSTGILASVALLWLINYVIIRSGVKNGLEKANKLLMP
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFILTLILVLRGITLPGAMDGINWYLTPDFSILLNAQVWIAAFSQIFFSLSLGYGIMIA
HHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
YASYLPKKSDLTTNAFAISLLNCGYSFLVGFAVFSTLGYMTYTTGVPLDEIVRDGIILAF
HHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHH
VVFPKALSLMPIGGFELAVVFFMALVIAGISSSVSIIEAINAAVMDKFGISRKKAILPIV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ILGFFGSLLYTTNAGIHWINMVDYFTSGYLLPIVGITETIVAIWIFNGNKFIDYLNNLSD
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHEEEEECCCHHHHHHCCCCC
MKIGKYWKISVGIITPLLLLGIVGSGILALYDAPYGGYAWKYLGIVAIMSVFSVLLSFFI
CCCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SKIKKGGVKTKPKR
HHHHHCCCCCCCCC
>Mature Secondary Structure 
AREQWSSNIGFILAAVGSAVGLGNIWRFPYVVYNNGGGAFLIPYFIALLCVGISVILLE
CCHHHCCCCHHHHHHHHHHHCCCCHHHCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHH
LVLGHSTRGSAPLAFRKLSEKYEWIGWLAVISGFTITTYYMAIIGWCLYYLVNLILYGFP
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TDFTSYFFDDILRSSMGPENIWSFSTGILASVALLWLINYVIIRSGVKNGLEKANKLLMP
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFILTLILVLRGITLPGAMDGINWYLTPDFSILLNAQVWIAAFSQIFFSLSLGYGIMIA
HHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
YASYLPKKSDLTTNAFAISLLNCGYSFLVGFAVFSTLGYMTYTTGVPLDEIVRDGIILAF
HHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHH
VVFPKALSLMPIGGFELAVVFFMALVIAGISSSVSIIEAINAAVMDKFGISRKKAILPIV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ILGFFGSLLYTTNAGIHWINMVDYFTSGYLLPIVGITETIVAIWIFNGNKFIDYLNNLSD
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHEEEEECCCHHHHHHCCCCC
MKIGKYWKISVGIITPLLLLGIVGSGILALYDAPYGGYAWKYLGIVAIMSVFSVLLSFFI
CCCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SKIKKGGVKTKPKR
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]