| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is polB [H]
Identifier: 150401589
GI number: 150401589
Start: 1223436
End: 1225358
Strand: Reverse
Name: polB [H]
Synonym: Maeo_1166
Alternate gene names: 150401589
Gene position: 1225358-1223436 (Counterclockwise)
Preceding gene: 150401590
Following gene: 150401585
Centisome position: 78.07
GC content: 29.64
Gene sequence:
>1923_bases ATGGATATAATCAATGAATTTTTAAATATTGAAATATTATTGGGGCCCAAAACATACAATAGAATTAAAAAATTAAAAGA TAATGAATTAACCCATTTACTCAATAATATCAAAAAATTTAAAACTATAAATAATAAATTAATATTATTAAATAACCATT TTTTAGATTTATTTTTAAACCATCCTCTTGACGAAATAATTAATAATTATAAAGATTTTGATTTTATATCCTGCTATATT TCAAATGAGGAGCTCCCAAAATCGCAAAGCGATTTTTACAATAATACATATATTACAGAAGAAAATGTTGATGCCTCAAA AATAAAAAATAATGAATTAAAAGCAGAAGAAAATGTTGAAGATGAATTTATAGGGGAAATTTTAGATGAAATGGATTATA ATTATAATCCATACAATGATACAGTAGAAACGGAAAATAAAGAAGATAATACCAATATTGCAACTAATATTGCAACCAAT ACACACAATACCGCCCCAACAGATATCGAACAAAAAGAAGAAATACAAAAATTAGAAACCCCCAAAAATACATTGGATGA AAGATTATTAAAATTAGAAAAAGAAAGAATCCACAGAATAAATAAAATAAAATCAATCAAAAATAGTGTATTTAATAAAA TAAACTATGTTGCAAAGGATATTGATTCTCAAATACATATATATGATAAATGGGATATTTCTGGAAAATCCACCTGCGAA GGAAGTCTTAACGATTTTATTGGGTATTTTAATGATAGATATTCAAAAATTAAAGCCATGATTGAAAGAAAGATAAATAA AAAGGCATATCCATTAAGTAAAATTCAAAGAATGAAAAACGAAAAAGATGTTTTTGTAGTTGGAATTGTTACGGATATGA ATACCACTAAAAAAGGACACAAAAGGGTAGTAATTGAAGATGATGAGGCCATATTTTCCGTAATTATTATGAAGGATAAA ATTGAAAAAGGGGAGCTCCCCGACGATATATTGTTAGACGAAGTCATAGGATTTGAAGGGGCAATATCCCAAGATGGGGG CGTGATGTTTCCCAATAATTGCATAAGACCAGATATCACCCCAAAACCTCCGAAAAGTATAGACGAAAAAATATACACTG CATTTTTATCCGATGTTCATATAGGGAGCTACGAGTTTTTAGAGGACTCATTTAAAAAATTCATAGAGCTATTAAATGGA GATACAAAAAACGGATTGGAAGAAAAAATAGTAAGCAGATTAAAATATATTTCAATTGCAGGAGATTTAGTGGATGGTGT AGGGATATACCCAGGTCAAGAATATGATTTATATGATGTGGATATTATATCCCAATATAAAGAAGTGGCAACATATATTG AGCAAATTCCAGAACATATTGATGTTATAATCTCCCCGGGAAACCACGATGCCCTTAGACCAGCCGAACCACAGCCAATA TTTCCTAAAAGAATTTTAGATTTATTTGATGGATTAAATAATGTGCATTTTGTTAGCAATCCTGGATTTGTAAATATACA TGGTTTGGATTTTTTATTATATCATGGTAGAAGCTTTGACGATGTGATAGGACAAATATCTTCGGCAAGTTATCAAGACC CCACCTCAATTATGAAAGAATTATTAAAAAGAAGACATTTATGCCCAACTTATGGGGGAAGATGTCCAATAGCCCCAGAA AAAGAAGATTATTTAGTAATTCATAATGAACCAGATATATTCCATACTGGACATATTCACATTAACGGATATGGGGCGTA TAAAGGAACAACATTAATAAACAGTGGAACATTTCAAGAACAGACGGATTTCCAGAAAAGAATGGGAATTCACCCTACTC CTGCAAGGATTCCAATAATCGATATGTCCAAAAATGGTAGTCAATATATCGAATGGGACAACGGAAAAATAAAAGTTATT TAA
Upstream 100 bases:
>100_bases ATCAAAAAAATAAAGAAAATAAAGAAAATAAAGAAAATAACGATAAAAATAATAAGGATATTGAACAGAAAAATAAAATA TAAAAAATAAAAGTGAAATA
Downstream 100 bases:
>100_bases AAGAAGATAAAAGAATATTTTTTTATTTATATATAGTCAATCTTCGGACAATTTCATTAAATATACTCTAAATTAAACTA CACCATCCTATCGAATTAAG
Product: DNA polymerase II small subunit
Products: NA
Alternate protein names: Pol II [H]
Number of amino acids: Translated: 640; Mature: 640
Protein sequence:
>640_residues MDIINEFLNIEILLGPKTYNRIKKLKDNELTHLLNNIKKFKTINNKLILLNNHFLDLFLNHPLDEIINNYKDFDFISCYI SNEELPKSQSDFYNNTYITEENVDASKIKNNELKAEENVEDEFIGEILDEMDYNYNPYNDTVETENKEDNTNIATNIATN THNTAPTDIEQKEEIQKLETPKNTLDERLLKLEKERIHRINKIKSIKNSVFNKINYVAKDIDSQIHIYDKWDISGKSTCE GSLNDFIGYFNDRYSKIKAMIERKINKKAYPLSKIQRMKNEKDVFVVGIVTDMNTTKKGHKRVVIEDDEAIFSVIIMKDK IEKGELPDDILLDEVIGFEGAISQDGGVMFPNNCIRPDITPKPPKSIDEKIYTAFLSDVHIGSYEFLEDSFKKFIELLNG DTKNGLEEKIVSRLKYISIAGDLVDGVGIYPGQEYDLYDVDIISQYKEVATYIEQIPEHIDVIISPGNHDALRPAEPQPI FPKRILDLFDGLNNVHFVSNPGFVNIHGLDFLLYHGRSFDDVIGQISSASYQDPTSIMKELLKRRHLCPTYGGRCPIAPE KEDYLVIHNEPDIFHTGHIHINGYGAYKGTTLINSGTFQEQTDFQKRMGIHPTPARIPIIDMSKNGSQYIEWDNGKIKVI
Sequences:
>Translated_640_residues MDIINEFLNIEILLGPKTYNRIKKLKDNELTHLLNNIKKFKTINNKLILLNNHFLDLFLNHPLDEIINNYKDFDFISCYI SNEELPKSQSDFYNNTYITEENVDASKIKNNELKAEENVEDEFIGEILDEMDYNYNPYNDTVETENKEDNTNIATNIATN THNTAPTDIEQKEEIQKLETPKNTLDERLLKLEKERIHRINKIKSIKNSVFNKINYVAKDIDSQIHIYDKWDISGKSTCE GSLNDFIGYFNDRYSKIKAMIERKINKKAYPLSKIQRMKNEKDVFVVGIVTDMNTTKKGHKRVVIEDDEAIFSVIIMKDK IEKGELPDDILLDEVIGFEGAISQDGGVMFPNNCIRPDITPKPPKSIDEKIYTAFLSDVHIGSYEFLEDSFKKFIELLNG DTKNGLEEKIVSRLKYISIAGDLVDGVGIYPGQEYDLYDVDIISQYKEVATYIEQIPEHIDVIISPGNHDALRPAEPQPI FPKRILDLFDGLNNVHFVSNPGFVNIHGLDFLLYHGRSFDDVIGQISSASYQDPTSIMKELLKRRHLCPTYGGRCPIAPE KEDYLVIHNEPDIFHTGHIHINGYGAYKGTTLINSGTFQEQTDFQKRMGIHPTPARIPIIDMSKNGSQYIEWDNGKIKVI >Mature_640_residues MDIINEFLNIEILLGPKTYNRIKKLKDNELTHLLNNIKKFKTINNKLILLNNHFLDLFLNHPLDEIINNYKDFDFISCYI SNEELPKSQSDFYNNTYITEENVDASKIKNNELKAEENVEDEFIGEILDEMDYNYNPYNDTVETENKEDNTNIATNIATN THNTAPTDIEQKEEIQKLETPKNTLDERLLKLEKERIHRINKIKSIKNSVFNKINYVAKDIDSQIHIYDKWDISGKSTCE GSLNDFIGYFNDRYSKIKAMIERKINKKAYPLSKIQRMKNEKDVFVVGIVTDMNTTKKGHKRVVIEDDEAIFSVIIMKDK IEKGELPDDILLDEVIGFEGAISQDGGVMFPNNCIRPDITPKPPKSIDEKIYTAFLSDVHIGSYEFLEDSFKKFIELLNG DTKNGLEEKIVSRLKYISIAGDLVDGVGIYPGQEYDLYDVDIISQYKEVATYIEQIPEHIDVIISPGNHDALRPAEPQPI FPKRILDLFDGLNNVHFVSNPGFVNIHGLDFLLYHGRSFDDVIGQISSASYQDPTSIMKELLKRRHLCPTYGGRCPIAPE KEDYLVIHNEPDIFHTGHIHINGYGAYKGTTLINSGTFQEQTDFQKRMGIHPTPARIPIIDMSKNGSQYIEWDNGKIKVI
Specific function: Possesses two activities:a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase [H]
COG id: COG1311
COG function: function code L; Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase delta/II small subunit family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR011149 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 73561; Mature: 73561
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIINEFLNIEILLGPKTYNRIKKLKDNELTHLLNNIKKFKTINNKLILLNNHFLDLFLN CCCHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEHHHC HPLDEIINNYKDFDFISCYISNEELPKSQSDFYNNTYITEENVDASKIKNNELKAEENVE CCHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCEEECCCCCHHHHCCCCCCCCCCCC DEFIGEILDEMDYNYNPYNDTVETENKEDNTNIATNIATNTHNTAPTDIEQKEEIQKLET HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCC PKNTLDERLLKLEKERIHRINKIKSIKNSVFNKINYVAKDIDSQIHIYDKWDISGKSTCE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC GSLNDFIGYFNDRYSKIKAMIERKINKKAYPLSKIQRMKNEKDVFVVGIVTDMNTTKKGH CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCC KRVVIEDDEAIFSVIIMKDKIEKGELPDDILLDEVIGFEGAISQDGGVMFPNNCIRPDIT EEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCC PKPPKSIDEKIYTAFLSDVHIGSYEFLEDSFKKFIELLNGDTKNGLEEKIVSRLKYISIA CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH GDLVDGVGIYPGQEYDLYDVDIISQYKEVATYIEQIPEHIDVIISPGNHDALRPAEPQPI HHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCC FPKRILDLFDGLNNVHFVSNPGFVNIHGLDFLLYHGRSFDDVIGQISSASYQDPTSIMKE CHHHHHHHHCCCCCEEEECCCCEEEEECEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHH LLKRRHLCPTYGGRCPIAPEKEDYLVIHNEPDIFHTGHIHINGYGAYKGTTLINSGTFQE HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECEEEEEEEECCCCCEEEECCCCCH QTDFQKRMGIHPTPARIPIIDMSKNGSQYIEWDNGKIKVI HHHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCEEEEC >Mature Secondary Structure MDIINEFLNIEILLGPKTYNRIKKLKDNELTHLLNNIKKFKTINNKLILLNNHFLDLFLN CCCHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEHHHC HPLDEIINNYKDFDFISCYISNEELPKSQSDFYNNTYITEENVDASKIKNNELKAEENVE CCHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCEEECCCCCHHHHCCCCCCCCCCCC DEFIGEILDEMDYNYNPYNDTVETENKEDNTNIATNIATNTHNTAPTDIEQKEEIQKLET HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCC PKNTLDERLLKLEKERIHRINKIKSIKNSVFNKINYVAKDIDSQIHIYDKWDISGKSTCE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC GSLNDFIGYFNDRYSKIKAMIERKINKKAYPLSKIQRMKNEKDVFVVGIVTDMNTTKKGH CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCC KRVVIEDDEAIFSVIIMKDKIEKGELPDDILLDEVIGFEGAISQDGGVMFPNNCIRPDIT EEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCC PKPPKSIDEKIYTAFLSDVHIGSYEFLEDSFKKFIELLNGDTKNGLEEKIVSRLKYISIA CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH GDLVDGVGIYPGQEYDLYDVDIISQYKEVATYIEQIPEHIDVIISPGNHDALRPAEPQPI HHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCC FPKRILDLFDGLNNVHFVSNPGFVNIHGLDFLLYHGRSFDDVIGQISSASYQDPTSIMKE CHHHHHHHHCCCCCEEEECCCCEEEEECEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHH LLKRRHLCPTYGGRCPIAPEKEDYLVIHNEPDIFHTGHIHINGYGAYKGTTLINSGTFQE HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECEEEEEEEECCCCCEEEECCCCCH QTDFQKRMGIHPTPARIPIIDMSKNGSQYIEWDNGKIKVI HHHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]