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The map label for this gene is rpoN [H]

Identifier: 150401517

GI number: 150401517

Start: 1142076

End: 1142285

Strand: Reverse

Name: rpoN [H]

Synonym: Maeo_1094

Alternate gene names: 150401517

Gene position: 1142285-1142076 (Counterclockwise)

Preceding gene: 150401518

Following gene: 150401516

Centisome position: 72.78

GC content: 33.33

Gene sequence:

>210_bases
ATGGTAATGTTTCCAATAAGATGTTTTTCATGCGGAGGAGTAATCTCCGAAGTTTATGGGGAGTATGTATCTAAATTAAA
AGAGGGGGCGGATTTATCCAACGCCTTAGATGAGTTAGGTATAAAAAAATACTGCTGTAGAAGAATGTTTATCTCTCATA
GTATCGACGAAAATGGAAATGAATTATTTGACGAAGTTATGAAATATTAA

Upstream 100 bases:

>100_bases
GCATTGCTATATATGCAGTTATTTTGGAAGAATACAATATTTAATGGATTTTCATTAAATATTATTAACTATTATTTTCT
TTTTAATTTGGTGATATTAA

Downstream 100 bases:

>100_bases
AAATTATAAAATATTAATTTAAAATTTGATATTATTAATATTAGATATTTCAATACATTTTAACTACATTTTATATATGG
GACTGTGGGGTAGCTTGGTC

Product: DNA-directed RNA polymerase subunit N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MVMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISHSIDENGNELFDEVMKY

Sequences:

>Translated_69_residues
MVMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISHSIDENGNELFDEVMKY
>Mature_69_residues
MVMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISHSIDENGNELFDEVMKY

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1644

COG function: function code K; DNA-directed RNA polymerase, subunit N (RpoN/RPB10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoN/eukaryotic RPB10 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR000268
- InterPro:   IPR020789
- ProDom:   PD006539 [H]

Pfam domain/function: PF01194 RNA_pol_N [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 7881; Mature: 7881

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS01112 RNA_POL_N_8KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
11.6 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
11.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISHSIDENGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ELFDEVMKY
HHHHHHHCC
>Mature Secondary Structure
MVMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISHSIDENGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ELFDEVMKY
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]