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The map label for this gene is rpoK [H]

Identifier: 150401516

GI number: 150401516

Start: 1141661

End: 1141846

Strand: Reverse

Name: rpoK [H]

Synonym: Maeo_1093

Alternate gene names: 150401516

Gene position: 1141846-1141661 (Counterclockwise)

Preceding gene: 150401517

Following gene: 150401515

Centisome position: 72.75

GC content: 30.11

Gene sequence:

>186_bases
ATGAAATATACAAAATTTGAAAAAGCAAGATTACTTGGTTCAAGAGCCCTACAAATATCTGATGGAGCATTCGCAACAGT
AGAATCAGAAGAAAAATCATCAGGAGTAATTGCAATGAATGAATTTAAACAGGGAAAATTGCCTTTAAAGGTTAAAAAAC
CATTAAAAGAGCAAGACAATATATAA

Upstream 100 bases:

>100_bases
TGAGTTCGAATCTCAGCAGTCCCACCATTTATTATGTAATATAAATATATCATAAATATATATTATAAAATATTCTCTAA
TATCCTAAAAGAGGGATTAA

Downstream 100 bases:

>100_bases
TTGTTATAATTAAATACTATCCTATAAAATAAATAATATCCCATAAAACTTTTTTTGATATATGTTAATATTAATACTAA
CACGGTCGTATATATTTTAT

Product: RNA polymerase Rpb6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 61; Mature: 61

Protein sequence:

>61_residues
MKYTKFEKARLLGSRALQISDGAFATVESEEKSSGVIAMNEFKQGKLPLKVKKPLKEQDNI

Sequences:

>Translated_61_residues
MKYTKFEKARLLGSRALQISDGAFATVESEEKSSGVIAMNEFKQGKLPLKVKKPLKEQDNI
>Mature_61_residues
MKYTKFEKARLLGSRALQISDGAFATVESEEKSSGVIAMNEFKQGKLPLKVKKPLKEQDNI

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 6828; Mature: 6828

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYTKFEKARLLGSRALQISDGAFATVESEEKSSGVIAMNEFKQGKLPLKVKKPLKEQDN
CCCCCCHHHHHCCCCEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCEEECCCCCCCCC
I
C
>Mature Secondary Structure
MKYTKFEKARLLGSRALQISDGAFATVESEEKSSGVIAMNEFKQGKLPLKVKKPLKEQDN
CCCCCCHHHHHCCCCEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCEEECCCCCCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]