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The map label for this gene is yiaD [H]

Identifier: 150398661

GI number: 150398661

Start: 3682204

End: 3682869

Strand: Direct

Name: yiaD [H]

Synonym: Smed_3475

Alternate gene names: 150398661

Gene position: 3682204-3682869 (Clockwise)

Preceding gene: 150398658

Following gene: 150398664

Centisome position: 97.36

GC content: 66.22

Gene sequence:

>666_bases
ATGATCAAGAAATGCGCCATCCTGGCTGTCGCGGCCATCTATCTTTCCGGATGCACCACCACCGATCCCTATACGGGAGA
ACAGAAGATGTCGAACACCGCCGGGGGCGCTCTGATCGGCGCCGGTCTCGGCGCCGCGACCGGCCTTCTCGTGGGCGGCA
GTGCCGCGGGACGGCGCGACGCGGCACTCGTGGGTGCGGGCATCGGCGCTCTCGGCGGCGGCCTGGTCGGAAACTACATG
GACCAGCAGGAATCCGAACTGCGCGCTCAACTTCAGGGCACCGGCGTTTCGGTCACCCGCGCCGGCGACCGCATCATCCT
GAACATGCCGTCAAACATCACCTTCGCGACCGACCGCGACCAGGTGATCCCGGCATTCTACTCAACGCTCGATTCGGTTG
CGATCGTGCTGCGCAAATTCAGCAAGACGCTCATCGACGTCGACGGTCACACGGACTCGACGGGCAGCGCGTCCTACAAT
CAGGGGCTGTCGGAGCGGCGTGCGGCCTCCGTCGCCAACTACCTCGCCAGCCGCGGCGTCGACCAGCGGCGCATGTCGGC
AGTCGGCTACGGCATGGAACGGCCGGTCGCCTCCAACGCCAGCGAGATCGGCCGCGTCCAGAACCGCCGCGTCGAAATCT
CGATCGCCCCGATCAAGCAGGGCTGA

Upstream 100 bases:

>100_bases
GCGATGCATCCTGCGGGAGCAAAGAGGAAGGCCCCTTCATCTTCCTGCCGCAATCGATAGTATGAACCGATCTTGAGCAC
CAATGGGGACAATTGATTCG

Downstream 100 bases:

>100_bases
ACCCCTTCCGATCGTTCACAAGAGGCCGCGCGGATTTTCCGGGCGGCCTCTTTCCGAGCGGCAACCACCATGCCGGGTTT
GCTACACCGGGAAGGCTCGA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIKKCAILAVAAIYLSGCTTTDPYTGEQKMSNTAGGALIGAGLGAATGLLVGGSAAGRRDAALVGAGIGALGGGLVGNYM
DQQESELRAQLQGTGVSVTRAGDRIILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFSKTLIDVDGHTDSTGSASYN
QGLSERRAASVANYLASRGVDQRRMSAVGYGMERPVASNASEIGRVQNRRVEISIAPIKQG

Sequences:

>Translated_221_residues
MIKKCAILAVAAIYLSGCTTTDPYTGEQKMSNTAGGALIGAGLGAATGLLVGGSAAGRRDAALVGAGIGALGGGLVGNYM
DQQESELRAQLQGTGVSVTRAGDRIILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFSKTLIDVDGHTDSTGSASYN
QGLSERRAASVANYLASRGVDQRRMSAVGYGMERPVASNASEIGRVQNRRVEISIAPIKQG
>Mature_221_residues
MIKKCAILAVAAIYLSGCTTTDPYTGEQKMSNTAGGALIGAGLGAATGLLVGGSAAGRRDAALVGAGIGALGGGLVGNYM
DQQESELRAQLQGTGVSVTRAGDRIILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFSKTLIDVDGHTDSTGSASYN
QGLSERRAASVANYLASRGVDQRRMSAVGYGMERPVASNASEIGRVQNRRVEISIAPIKQG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=224, Percent_Identity=47.3214285714286, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1788957, Length=131, Percent_Identity=35.1145038167939, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1787191, Length=124, Percent_Identity=33.8709677419355, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22843; Mature: 22843

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKCAILAVAAIYLSGCTTTDPYTGEQKMSNTAGGALIGAGLGAATGLLVGGSAAGRRD
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHEEECCCCCCCCC
AALVGAGIGALGGGLVGNYMDQQESELRAQLQGTGVSVTRAGDRIILNMPSNITFATDRD
HHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCCC
QVIPAFYSTLDSVAIVLRKFSKTLIDVDGHTDSTGSASYNQGLSERRAASVANYLASRGV
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCC
DQRRMSAVGYGMERPVASNASEIGRVQNRRVEISIAPIKQG
CHHHHHHHCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCC
>Mature Secondary Structure
MIKKCAILAVAAIYLSGCTTTDPYTGEQKMSNTAGGALIGAGLGAATGLLVGGSAAGRRD
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHEEECCCCCCCCC
AALVGAGIGALGGGLVGNYMDQQESELRAQLQGTGVSVTRAGDRIILNMPSNITFATDRD
HHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCCC
QVIPAFYSTLDSVAIVLRKFSKTLIDVDGHTDSTGSASYNQGLSERRAASVANYLASRGV
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCC
DQRRMSAVGYGMERPVASNASEIGRVQNRRVEISIAPIKQG
CHHHHHHHCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]