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The map label for this gene is ydcN [H]

Identifier: 150398657

GI number: 150398657

Start: 3680109

End: 3680702

Strand: Direct

Name: ydcN [H]

Synonym: Smed_3471

Alternate gene names: 150398657

Gene position: 3680109-3680702 (Clockwise)

Preceding gene: 150398654

Following gene: 150398658

Centisome position: 97.31

GC content: 63.97

Gene sequence:

>594_bases
ATGCAATCTCTTATAATGGAAAACCTGGGCAGCCAGCTAGACGAGGTGGTCGGCATGCGCGTGCGCGCGCTTCGCGCGGC
GCAGGATCTCACGCTCGATGATCTCGCAAACCGCGCGGGCGTCAGCCGTGCCATGATTTCGCGGATCGAGCGGGGCGAGG
CGAGCCCGACGGCGCAGTTGCTGGCAAGGCTCTGCAGCGCGCTGGGTACGACACTTTCGGCGCTCTTCGCTTCCGGGGTG
AGCGAGGCTTCGCCCTTGGCCCGGCGGCAGGATCAGCGGCTCTGGCGCGATCCCGAAAGCGGTTATCTGCGCCGGTCGGT
TTCGCCCGAAGGCGTAGGCTCGCCGATCGATATCGTCGAGGTCGAGTTTCCGCCCGGTGCCCGCGTCGTGTTCGAGCGCC
AGCCGATGGATCGTGGGATCACCCAGCACCTCTGGCTTTTCTCCGGTCGCCTCGAATTGACGATGGAGAGCGGGCAGCAG
CTTCTGGAACCGGGCGATTGCCTTTTCATGGGGCTCGAAGAGGCCCACATTTTCCACAACCCCTACGAGGAAGCGGCGCA
TTACGCCATTGTCCTTTGCCGCAACAAGGTCTGA

Upstream 100 bases:

>100_bases
AACCAAACCCTAGATCAGGAAACCGCCCGGCGCTGTCGTCAAAGCGGCATGCGCAAGGCTTATTTACAGCCCTGGCCTCC
TTGACTCCATTATAGTAGAA

Downstream 100 bases:

>100_bases
CATGCCCGACGTCGATATCCGTGTGCTCACCGAAGAAGAAGCTCTGGCTTCCCTGCCGTCACTGGCCGACATCCTTTCCG
ATTGCGTCGAAGGTGGCGCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGTTLSALFASGV
SEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSPIDIVEVEFPPGARVVFERQPMDRGITQHLWLFSGRLELTMESGQQ
LLEPGDCLFMGLEEAHIFHNPYEEAAHYAIVLCRNKV

Sequences:

>Translated_197_residues
MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGTTLSALFASGV
SEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSPIDIVEVEFPPGARVVFERQPMDRGITQHLWLFSGRLELTMESGQQ
LLEPGDCLFMGLEEAHIFHNPYEEAAHYAIVLCRNKV
>Mature_197_residues
MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGTTLSALFASGV
SEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSPIDIVEVEFPPGARVVFERQPMDRGITQHLWLFSGRLELTMESGQQ
LLEPGDCLFMGLEEAHIFHNPYEEAAHYAIVLCRNKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21804; Mature: 21804

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LARLCSALGTTLSALFASGVSEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSPIDIVE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEE
VEFPPGARVVFERQPMDRGITQHLWLFSGRLELTMESGQQLLEPGDCLFMGLEEAHIFHN
EECCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEEECHHHHHHCC
PYEEAAHYAIVLCRNKV
CHHHHHHEEEEEECCCC
>Mature Secondary Structure
MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LARLCSALGTTLSALFASGVSEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSPIDIVE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEE
VEFPPGARVVFERQPMDRGITQHLWLFSGRLELTMESGQQLLEPGDCLFMGLEEAHIFHN
EECCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEEECHHHHHHCC
PYEEAAHYAIVLCRNKV
CHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]