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The map label for this gene is 150398542

Identifier: 150398542

GI number: 150398542

Start: 3551931

End: 3552659

Strand: Direct

Name: 150398542

Synonym: Smed_3353

Alternate gene names: NA

Gene position: 3551931-3552659 (Clockwise)

Preceding gene: 150398541

Following gene: 150398543

Centisome position: 93.92

GC content: 65.16

Gene sequence:

>729_bases
ATGAAGAAGCGATGCGCAACACGCAACAGACTTGAAAGGCAGCCCTTGATGGCCCCCACCCGCTTTCCGCATCGTGCGGT
CCTGTGCGCGATCGCCTTCGCCTTGCTGGCAGGCTGCGCCAACAAGGACAGGCTCGCAACCGGCGCCCTGCCGGACGACT
ACCGGACGCGCCACCCGATCGTGCTCACGGAAGGCGAGCGAACCATCGACATTCCCGTCGCCTCGGGCGACACGCGGCTT
ACTCAGGGGACGCGCGACGTCATCCGCGGCTTTGCCGCCGAGTATCGCAACGCATCGAGCGGCGTCGTCCAGATCATGCT
GCCGCGCGGCTCGGTCAACGGCCGTGCCGCCCAGATCCTCCGCAAGGAAATTCGTCGCCTGCTGGCAGGGAGCGGTGTGT
CGCCGAAGAAGATAATCGAGACGAGCTACGACGCGTCGGTCACGGGCGACGCCGCTCCCATCCGGCTCAGCTATGTCGCC
ATTACCGCGCAGACAGCGCCCTGCGGCGCTTGGCCGGAAGACCTGGCGCTGAACACGCTGGAGAACCGCAATTACTATAA
TTTCGGCTGCGCCACCCAGTCCAACCTTGCCGCGCAGATCGCCAATCCAACGGATCTCGTCGGTCCGCGCCGTATGTCGC
CGATCGATGCGGAGCAGCGCGGGCAGGTGATCGATAGCTGGCGCGGCACGGAAAAGGGCGACGGCGGAACCACGATCGTC
TTCAACTGA

Upstream 100 bases:

>100_bases
TCCTGGGCCGCGTCAACCGGATCTATGGGCGCGCCGAGGCACAGCCGCCCGCCGGCCGTTACCACGGCAATGTCGGCTTC
ATCTACAAATAGGTCCGGCC

Downstream 100 bases:

>100_bases
CATGGAGCCATCCAGGGAAAAGCGATGAACGCGATTGAATATACGATCGACAGCGGCGCAGCCGGAGATTGGCCTTTCGA
GGGGACGCGATCGGGCGATC

Product: pilus biogenesis lipoprotein CpaD

Products: NA

Alternate protein names: Pilus Assembly Protein CpaD; Pilus Assembly Protein; Type IV Pili Component-Like; Components Of Type IV Pilus; Component Of Type IV Pilus

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKKRCATRNRLERQPLMAPTRFPHRAVLCAIAFALLAGCANKDRLATGALPDDYRTRHPIVLTEGERTIDIPVASGDTRL
TQGTRDVIRGFAAEYRNASSGVVQIMLPRGSVNGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVA
ITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWRGTEKGDGGTTIV
FN

Sequences:

>Translated_242_residues
MKKRCATRNRLERQPLMAPTRFPHRAVLCAIAFALLAGCANKDRLATGALPDDYRTRHPIVLTEGERTIDIPVASGDTRL
TQGTRDVIRGFAAEYRNASSGVVQIMLPRGSVNGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVA
ITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWRGTEKGDGGTTIV
FN
>Mature_242_residues
MKKRCATRNRLERQPLMAPTRFPHRAVLCAIAFALLAGCANKDRLATGALPDDYRTRHPIVLTEGERTIDIPVASGDTRL
TQGTRDVIRGFAAEYRNASSGVVQIMLPRGSVNGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVA
ITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWRGTEKGDGGTTIV
FN

Specific function: Unknown

COG id: COG5461

COG function: function code N; Type IV pili component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26266; Mature: 26266

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRCATRNRLERQPLMAPTRFPHRAVLCAIAFALLAGCANKDRLATGALPDDYRTRHPI
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCE
VLTEGERTIDIPVASGDTRLTQGTRDVIRGFAAEYRNASSGVVQIMLPRGSVNGRAAQIL
EEECCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
RKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTL
HHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH
ENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWRGTEKGDGGTTIV
CCCCEEEECCCCCCCCCEEECCCHHCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCEEE
FN
EC
>Mature Secondary Structure
MKKRCATRNRLERQPLMAPTRFPHRAVLCAIAFALLAGCANKDRLATGALPDDYRTRHPI
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCE
VLTEGERTIDIPVASGDTRLTQGTRDVIRGFAAEYRNASSGVVQIMLPRGSVNGRAAQIL
EEECCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
RKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTL
HHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH
ENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWRGTEKGDGGTTIV
CCCCEEEECCCCCCCCCEEECCCHHCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCEEE
FN
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA