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The map label for this gene is hofQ [C]

Identifier: 150398541

GI number: 150398541

Start: 3550348

End: 3551922

Strand: Direct

Name: hofQ [C]

Synonym: Smed_3352

Alternate gene names: 150398541

Gene position: 3550348-3551922 (Clockwise)

Preceding gene: 150398540

Following gene: 150398542

Centisome position: 93.88

GC content: 62.98

Gene sequence:

>1575_bases
GTGTGGCTCTCCAGAATCAGAAGTAGGACGGGGCGCAAGGTGAAACGGATCGAAAACAGGTTTCGGGCGTCTCTCGCAGC
CGGCTTCTCCTTCTGGCTGATTTTCTCGGGCATGGCGCTGCCGACGGCTGCTCCGGCCGAGGCCGCGTCCTCCTCGGTCG
TGCGGATCGTCAATAGTGGCCCGGGCGCCCGCAAGACCATCAACCTCGGCCTCAACAAGGCGGTCGTCGTCGATCTGCCG
AGCGACGCCCATGACATTCTCGTCGCCGATCCGTCGCTCGCCGACGCGATCACCCGCACCTCCCGCCGCATCTATCTCTT
CGGCAAGTCCGTCGGCCAGACGAATATCTTCGTCTTCGGTCCGGGAGGCGAGGAGATCGTCAGCCTTGAGGTTGCCGTGG
AGCGTGACGTCGCGGGCCTGGAGTCGAACCTCCGCCGCTTCATTCCCGATGCCGACATCAAGGTCGAGATCATCTCGGAC
AACGTGGTGTTGACGGGCACGGTGCGCACGCCGCTCGACTCGACCAGGGCTGTCGATCTTGCGCGCGCTTTCCTCAAGGG
CGGCGAAGCGACCACACGCAATATCACGGCTCAGGGCAATAACGGTGATGCGGATATCTTCGCCGAAGACCGCCAGAGCT
CGCAGATCGTCAATCTCCTGACCATCGAGGGCGACGATCAGGTGACGCTGAAGGTGACTGTGGCAGAGGTCAGCCGGCAG
GTGCTGAAGCAGCTCGGATTCAACGGCCGCGTATCGGACGGCGAAAGCGGCATCAGCTTCCGCAACCCGGCAAATCTGGG
CGATATGATCGGCATCGGCACGAACGCCCTCATCAAGGGTTCGATCGGCGGCACCACCATTTCGAGCTACATCAACGCGA
TGGAGCAGGCGGGCGTCATGCGCACGCTCGCCGAGCCGAGCCTCACGGCTATTTCCGGCCAGGAGGCGAAGTTCTATGTC
GGCGGCGAATTCCGGCTGGCCGGCGTGCAGGAAGTTTCAACTGACGACGACAGCGGCGAAACCACGGTCGAGCGGGAGGT
GAACGACGTCGAGTATGGTATCAGGCTGAACTTCAAGCCGGTCGTCCTCGGCCCCGGCCGCATCAGCCTGCAGATCGAGA
CCGATGTTTCCGAGCCGACCTATGAGGGTTCGGTCGTCACCGGCAACGGTACGGTCAATATTCCGGGCAATACCTTCCTC
GGCATTCGCCGGCGCGAGGCCTCTACCAGCGTCGAACTTCCGTCCGGCGGTTCGATCGTCATCGCCGGTCTCGTGCAGGA
CAATATCCGCCAGGCGATGTCGGGTCTGCCCGCCGCCTCGAAGATCCCGATCCTCGGCACGCTCTTCCGCAGCAAGGATT
TCCAGCGAAGCGAGACGGAGCTCGTCATCATCGCCACACCCTATCTCGTGCGGCCGGTGGCCCGCAGCGCGATCTCGCGT
CCGGACGACAATTTCAATCCGGCCAACGATCTCGAAAGCTTTTTCCTGGGCCGCGTCAACCGGATCTATGGGCGCGCCGA
GGCACAGCCGCCCGCCGGCCGTTACCACGGCAATGTCGGCTTCATCTACAAATAG

Upstream 100 bases:

>100_bases
GCGCAGGAGCCGGACACCACGGCTGCCGACCACCTTCTCAACGGCGACGGCCAACCAAGCATTCAGGTCATCAAGTCGGG
CTCCATCGTCAAGGGCGACG

Downstream 100 bases:

>100_bases
GTCCGGCCATGAAGAAGCGATGCGCAACACGCAACAGACTTGAAAGGCAGCCCTTGATGGCCCCCACCCGCTTTCCGCAT
CGTGCGGTCCTGTGCGCGAT

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MWLSRIRSRTGRKVKRIENRFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDLP
SDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISD
NVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQ
VLKQLGFNGRVSDGESGISFRNPANLGDMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYV
GGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFL
GIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISR
PDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGRYHGNVGFIYK

Sequences:

>Translated_524_residues
MWLSRIRSRTGRKVKRIENRFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDLP
SDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISD
NVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQ
VLKQLGFNGRVSDGESGISFRNPANLGDMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYV
GGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFL
GIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISR
PDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGRYHGNVGFIYK
>Mature_524_residues
MWLSRIRSRTGRKVKRIENRFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDLP
SDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISD
NVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQ
VLKQLGFNGRVSDGESGISFRNPANLGDMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYV
GGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFL
GIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISR
PDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGRYHGNVGFIYK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=249, Percent_Identity=26.9076305220884, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 56176; Mature: 56176

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLSRIRSRTGRKVKRIENRFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSG
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCCHHHCCCCEEEEEECC
PGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFG
CCCCEEEEECCCEEEEEECCCCCCEEEEECCHHHHHHHHCCCEEEEEECCCCCEEEEEEC
PGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDL
CCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHH
ARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQ
HHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEEEHHHHHHH
VLKQLGFNGRVSDGESGISFRNPANLGDMIGIGTNALIKGSIGGTTISSYINAMEQAGVM
HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH
RTLAEPSLTAISGQEAKFYVGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKP
HHHCCCCEEEECCCCEEEEECCEEEEECCEECCCCCCCCCEEEECCCCCEEEEEEEEEEE
VVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIV
EEECCCEEEEEEEECCCCCCCCCEEEECCCEEECCCCEEEEEEECCCCCEEECCCCCCEE
IAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISR
EEEHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHCC
PDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGRYHGNVGFIYK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MWLSRIRSRTGRKVKRIENRFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSG
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCCHHHCCCCEEEEEECC
PGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFG
CCCCEEEEECCCEEEEEECCCCCCEEEEECCHHHHHHHHCCCEEEEEECCCCCEEEEEEC
PGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDL
CCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHH
ARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQ
HHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEEEHHHHHHH
VLKQLGFNGRVSDGESGISFRNPANLGDMIGIGTNALIKGSIGGTTISSYINAMEQAGVM
HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH
RTLAEPSLTAISGQEAKFYVGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKP
HHHCCCCEEEECCCCEEEEECCEEEEECCEECCCCCCCCCEEEECCCCCEEEEEEEEEEE
VVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIV
EEECCCEEEEEEEECCCCCCCCCEEEECCCEEECCCCEEEEEEECCCCCEEECCCCCCEE
IAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISR
EEEHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHCC
PDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGRYHGNVGFIYK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]