Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
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Accession | NC_009636 |
Length | 3,781,904 |
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The map label for this gene is 150398521
Identifier: 150398521
GI number: 150398521
Start: 3529704
End: 3530867
Strand: Direct
Name: 150398521
Synonym: Smed_3332
Alternate gene names: NA
Gene position: 3529704-3530867 (Clockwise)
Preceding gene: 150398520
Following gene: 150398522
Centisome position: 93.33
GC content: 64.52
Gene sequence:
>1164_bases ATGGCAAGCATCAGTCTTCCCGTCGGCGGTCGGCTCCTTCCCTACGAACTCACCGGCCGGCCGGTGCCGTTGAAGGGGCG CGATGCGGCTGCCTTTCCGAGGGTCGCTTTCGCCGCCGCCCATGTCGTCGCCGACCCGCTTGCCGACAATGATCCCTGGG TGACGCCGGCAATCGACTGGGAGCGTACGCTTGCCTTTCGCCATCGCCTCTGGGATCTCGGGCTCGGTGTCGCCGAATCG ATGGACACGGCCCAGCGCGGCATGGGTCTCGGCTGGCCTGAGGCACGCGAACTCATCGGCCGCTCGCTCAGCGAGGCGCG CGGCCGTTCCGGCGCGCTGATAGCCTGCGGCGCGGGAACCGATCATCTGGTCCCGGGGCCCAACGTCACGATCGACGAAA TCCTCAGGGCTTATGAGAGTCAGATCGAGACGATCGAGGCCGAAGGCGGCCGCATCATCCTGATGGCGAGCCGGGCGCTT GCTGCCGCGGCAAAGGGGCCGGAGGACTATTTCCGGGTCTACGACCGCATTCTCTCGCAGGTGAAGGAGCCGGTGATCAT CCACTGGCTCGGTGAGATGTTCGATCCGGCGCTCGAAGGCTATTGGGGCAATGCCGACCATATGGCGGCGATGAAGACCT GCCTCGACGTCATCGAGGCGCATGCCGCCAAGGTCGACGGCATCAAGATTTCACTCCTTTCCAAGAAGAAGGAGATCGTG ATGCGACGGCAATTGCCGAAGGGCGTGCGCATGTACACCGGGGACGATTTCAACTATGCCGAGCTGATTTCCGGCGACGA GGAAGGGTATTCGGACGCACTGCTCGGCATCTTCGATGCGATCGCGCCGGTTGCTTCGGCTGCGCTGGAAGCGCTGGGCG GCGGGCGAAATGGGGAATTCTTCGAATTGCTGGATCCGACGGTGCCGCTCTCGCGCCACATCTTCAAGGCACCGACGCGC TTCTACAAGACCGGTGTCGTGTTTCTGGCCTATCTCAACGGCCTTCAGGACCATTTCGCCATGATCGGCGGACAGCAGAG CGCCCGGTCGCTCGTCCATCTCGCCGAGCTTTTCCGTCTGGCGGACAGAGCCGGCGTTCTCCAGGATCCGGAGCTGGCCG CCGGGCGCATGCGGCGCGTCCTCGCCGTCAACGGCGTCGCGTGA
Upstream 100 bases:
>100_bases GCTGGAGGCTGGCGCCAAGGGCGTGCAGCTCGCCGAACTGGGCTTGAAATCCTGGGCGGAGCGCCGCTGGCTCGACGTTC CGGAACTGGAGTTCTGAGAG
Downstream 100 bases:
>100_bases GGCCCCGGCATGACGGAAGCCCCGCGCGTCCGGCTTGTCGGCGCTGAGATTTTCGAGCGGCCGGTCGAGTTCCGTTTCCC TTTCCGCTTCGGGGCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MASISLPVGGRLLPYELTGRPVPLKGRDAAAFPRVAFAAAHVVADPLADNDPWVTPAIDWERTLAFRHRLWDLGLGVAES MDTAQRGMGLGWPEARELIGRSLSEARGRSGALIACGAGTDHLVPGPNVTIDEILRAYESQIETIEAEGGRIILMASRAL AAAAKGPEDYFRVYDRILSQVKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVIEAHAAKVDGIKISLLSKKKEIV MRRQLPKGVRMYTGDDFNYAELISGDEEGYSDALLGIFDAIAPVASAALEALGGGRNGEFFELLDPTVPLSRHIFKAPTR FYKTGVVFLAYLNGLQDHFAMIGGQQSARSLVHLAELFRLADRAGVLQDPELAAGRMRRVLAVNGVA
Sequences:
>Translated_387_residues MASISLPVGGRLLPYELTGRPVPLKGRDAAAFPRVAFAAAHVVADPLADNDPWVTPAIDWERTLAFRHRLWDLGLGVAES MDTAQRGMGLGWPEARELIGRSLSEARGRSGALIACGAGTDHLVPGPNVTIDEILRAYESQIETIEAEGGRIILMASRAL AAAAKGPEDYFRVYDRILSQVKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVIEAHAAKVDGIKISLLSKKKEIV MRRQLPKGVRMYTGDDFNYAELISGDEEGYSDALLGIFDAIAPVASAALEALGGGRNGEFFELLDPTVPLSRHIFKAPTR FYKTGVVFLAYLNGLQDHFAMIGGQQSARSLVHLAELFRLADRAGVLQDPELAAGRMRRVLAVNGVA >Mature_386_residues ASISLPVGGRLLPYELTGRPVPLKGRDAAAFPRVAFAAAHVVADPLADNDPWVTPAIDWERTLAFRHRLWDLGLGVAESM DTAQRGMGLGWPEARELIGRSLSEARGRSGALIACGAGTDHLVPGPNVTIDEILRAYESQIETIEAEGGRIILMASRALA AAAKGPEDYFRVYDRILSQVKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVIEAHAAKVDGIKISLLSKKKEIVM RRQLPKGVRMYTGDDFNYAELISGDEEGYSDALLGIFDAIAPVASAALEALGGGRNGEFFELLDPTVPLSRHIFKAPTRF YKTGVVFLAYLNGLQDHFAMIGGQQSARSLVHLAELFRLADRAGVLQDPELAAGRMRRVLAVNGVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41998; Mature: 41867
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASISLPVGGRLLPYELTGRPVPLKGRDAAAFPRVAFAAAHVVADPLADNDPWVTPAIDW CCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH ERTLAFRHRLWDLGLGVAESMDTAQRGMGLGWPEARELIGRSLSEARGRSGALIACGAGT HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCC DHLVPGPNVTIDEILRAYESQIETIEAEGGRIILMASRALAAAAKGPEDYFRVYDRILSQ CCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHHH VKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVIEAHAAKVDGIKISLLSKKKEIV HCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH MRRQLPKGVRMYTGDDFNYAELISGDEEGYSDALLGIFDAIAPVASAALEALGGGRNGEF HHHHCCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC FELLDPTVPLSRHIFKAPTRFYKTGVVFLAYLNGLQDHFAMIGGQQSARSLVHLAELFRL CEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH ADRAGVLQDPELAAGRMRRVLAVNGVA HHHCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure ASISLPVGGRLLPYELTGRPVPLKGRDAAAFPRVAFAAAHVVADPLADNDPWVTPAIDW CEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH ERTLAFRHRLWDLGLGVAESMDTAQRGMGLGWPEARELIGRSLSEARGRSGALIACGAGT HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCC DHLVPGPNVTIDEILRAYESQIETIEAEGGRIILMASRALAAAAKGPEDYFRVYDRILSQ CCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHHH VKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVIEAHAAKVDGIKISLLSKKKEIV HCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH MRRQLPKGVRMYTGDDFNYAELISGDEEGYSDALLGIFDAIAPVASAALEALGGGRNGEF HHHHCCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC FELLDPTVPLSRHIFKAPTRFYKTGVVFLAYLNGLQDHFAMIGGQQSARSLVHLAELFRL CEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH ADRAGVLQDPELAAGRMRRVLAVNGVA HHHCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA