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The map label for this gene is ytfA [C]

Identifier: 150398519

GI number: 150398519

Start: 3527751

End: 3528428

Strand: Direct

Name: ytfA [C]

Synonym: Smed_3330

Alternate gene names: 150398519

Gene position: 3527751-3528428 (Clockwise)

Preceding gene: 150398511

Following gene: 150398520

Centisome position: 93.28

GC content: 60.77

Gene sequence:

>678_bases
ATGGAGAAGATGCAAGGCGGGGCGAAAGGCAGAAACGGGGCTGCAGGCCGTGCGGAGCGGCCTCTGCAGCGCGATCCCGA
GCGCACGCGCGCCTCGATCCTCGCCGCCGCGACCCAGGAGTTTGCCGAAAATGGCATAGGTGGCGCGCGTGTGGACGCCA
TTGCCGAGCGTGCGGGCATCAACAAGCGGATGCTCTATCACTACTTCGGCGACAAGGAGCAGCTTTACCTTGCGGTCCTG
GAAGAGGCTTACGTGGGCATCAGAACGGCCGAGAAATCCCTTAACCTCAGTGACTTGGAGCCTGAGCAGGGAATTGCCGA
GCTCGCCATGTTCACCTGGGGCTACTTCCTGGAGCATCCGGAATTTCTCAGTCTTCTCGGCACCGAGAACCTGCATCGGG
CGCGCTGGCTGCGCCAATCGACGCGCCTCAAGGAATTGCATTCGAGCTTTATCGACAAGCTGTCCGACCTTCTCCAGCGC
GGCAGGAAGGAGGGGCTCTTCCGGCCGGATGTCGACCCGCTGAACCTTTATCTGACGATCGCCGCCCTGGGCTATTTCTA
CCTTTCCAATCAGTACACGCTGTCGACGATCTTTGGCCGCGACCTCATGGACAAGAGCAATCTCGACGTCTGGAAGCGCC
ATATCGTCCACGTCACGCTGGCGTCCATCCGAGGCTGA

Upstream 100 bases:

>100_bases
CTGTCAAGCAGTTGTGTGCGGAACTATCATTGACTTGTAAAATATTTTAACAAAGTTGCACCGAGTGCCGTCTGAGGCAA
GAGGTTCCGGAGGCTGCGTG

Downstream 100 bases:

>100_bases
TCCAAGCGCTTGTCGTTTTTTTTGTTGACAAGTGCGATTCTCCTCTGCCACAAAGTAACCGATTAGTTACTGGCTTGGGA
GGGCTGGTTCTCTCCCCTCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; TetR Family Protein Regulatory Protein; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MEKMQGGAKGRNGAAGRAERPLQRDPERTRASILAAATQEFAENGIGGARVDAIAERAGINKRMLYHYFGDKEQLYLAVL
EEAYVGIRTAEKSLNLSDLEPEQGIAELAMFTWGYFLEHPEFLSLLGTENLHRARWLRQSTRLKELHSSFIDKLSDLLQR
GRKEGLFRPDVDPLNLYLTIAALGYFYLSNQYTLSTIFGRDLMDKSNLDVWKRHIVHVTLASIRG

Sequences:

>Translated_225_residues
MEKMQGGAKGRNGAAGRAERPLQRDPERTRASILAAATQEFAENGIGGARVDAIAERAGINKRMLYHYFGDKEQLYLAVL
EEAYVGIRTAEKSLNLSDLEPEQGIAELAMFTWGYFLEHPEFLSLLGTENLHRARWLRQSTRLKELHSSFIDKLSDLLQR
GRKEGLFRPDVDPLNLYLTIAALGYFYLSNQYTLSTIFGRDLMDKSNLDVWKRHIVHVTLASIRG
>Mature_225_residues
MEKMQGGAKGRNGAAGRAERPLQRDPERTRASILAAATQEFAENGIGGARVDAIAERAGINKRMLYHYFGDKEQLYLAVL
EEAYVGIRTAEKSLNLSDLEPEQGIAELAMFTWGYFLEHPEFLSLLGTENLHRARWLRQSTRLKELHSSFIDKLSDLLQR
GRKEGLFRPDVDPLNLYLTIAALGYFYLSNQYTLSTIFGRDLMDKSNLDVWKRHIVHVTLASIRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25515; Mature: 25515

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMQGGAKGRNGAAGRAERPLQRDPERTRASILAAATQEFAENGIGGARVDAIAERAGI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
NKRMLYHYFGDKEQLYLAVLEEAYVGIRTAEKSLNLSDLEPEQGIAELAMFTWGYFLEHP
CHHHHHHECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH
EFLSLLGTENLHRARWLRQSTRLKELHSSFIDKLSDLLQRGRKEGLFRPDVDPLNLYLTI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
AALGYFYLSNQYTLSTIFGRDLMDKSNLDVWKRHIVHVTLASIRG
HHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKMQGGAKGRNGAAGRAERPLQRDPERTRASILAAATQEFAENGIGGARVDAIAERAGI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
NKRMLYHYFGDKEQLYLAVLEEAYVGIRTAEKSLNLSDLEPEQGIAELAMFTWGYFLEHP
CHHHHHHECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH
EFLSLLGTENLHRARWLRQSTRLKELHSSFIDKLSDLLQRGRKEGLFRPDVDPLNLYLTI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
AALGYFYLSNQYTLSTIFGRDLMDKSNLDVWKRHIVHVTLASIRG
HHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA