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The map label for this gene is ftsY [H]

Identifier: 150398285

GI number: 150398285

Start: 3236887

End: 3238449

Strand: Reverse

Name: ftsY [H]

Synonym: Smed_3091

Alternate gene names: 150398285

Gene position: 3238449-3236887 (Counterclockwise)

Preceding gene: 150398286

Following gene: 150398284

Centisome position: 85.63

GC content: 64.56

Gene sequence:

>1563_bases
ATGGCGATTGGTTTCATCAAGAAGATCTTCTCCTTCGGCAAGGACGCCGTCGACGAGAAACCCGCGCCGCCGCAGGAGGT
TTCGGATGCCGCACCCTCTTCTGTGCCCTCAGGAGAGCAGGGTGAGAGCCAGGCACCGGTCGAGGAAAAGCGTACCGCGG
CCGAGGCAACGGAAGCTGGCACAGACGATCGCGATGTCTCCCTCGCACCAAGCACGGCAAACACCGAAACCACGAGCGAC
GAAGCCCCGGCAGGTACTGCTCCCGCAGCAGATGAGAACACCGTGAAGCAGGACGAGAGCGTCCCGCATCCGATCTCTCC
CCTCGCGGGGGAGATGCCCGGCAGGGCAGAGGAGAGCGAGCCTCCTTCCGAACACCCAACGGGAGCCGATGACGTTTCGG
CACCCTCCTCCGTCCCTTCGGGACATCTCCCCCTCAACGGGGGAGATCACGGGGAGACCGAGGCAACCGCTGAGAACAGC
GGGGCTCCTGTCGAGCAGGCGGAGGCGCTCGCAGGCGACGCCGATAGGCGGTCAGATGCCGGTTCCGACATCGAAGCGGA
GCTCCGCACATCCAGCCTTCCCAAAGGTTTCGCCGCCGCCGACAGGCGCCCGAAGGACGAGACCCCGGCGGCGCAGCCGA
AGCTCAACTGGTACCAGCGCCTCCGTCTGGGTCTCGCCCGCACCTCGTCGCAGCTCACCGGTCAGATCGCCAGTCTCTTC
ACCAAACGCAAGCTGGACGAGGCGACGCTGCAGGACCTCGAAGATCTCCTGATCCAGGCGGATCTCGGCGTCGAGACCGC
GATGCGCATCACCGACGCGCTCGCCTCGGAGCGTTACGGCAAGGATGTGTCCGGCGAGGACGTATCGCGCATCATGGCGG
GGGAGATCACCAAAGTGCTGGCGCCGGTCGCAAAGCCGCTCGAACTCGATCTCAATCATAAGCCGCATGTGATCCTGGTC
GTCGGCGTCAACGGGACAGGAAAGACCACGACGATCGGCAAGCTTGCTGCGAAACTGTCCGGCGCGGGCCTCAAGGTCAT
GATGGCCGCCGGCGACACTTTCCGGGCTGCGGCGATCGAACAGCTGAAGATCTGGGCCGAGCGGACGAGGTCCGAAATCG
TCTCCTCCAAGCTCGGAGCCGACGCGGCCGGGCTGGCCTATGAGGCGTTCCAGCGTGCCCGCGAGCAGAAGGCGGACGTG
CTGATCATAGACACCGCCGGGCGATTGCAGAACAAGGCCGAGCTGATGGCGGAACTGGAGAAGATCGTACGCGTTCTCGG
GAAGCTCGATCCGGACGCGCCGCATACGGTCCTGCAGACACTGGATGCCACGACCGGGCAGAACGCGCTGCAGCAGGTAG
AGATATTCCGCAACGTTGCGGGCGTCAGCGGATTGATCATGACAAAGCTCGACGGGACGGCGCGCGGCGGAATCCTGGTG
GCGATCTCCGCCAAGCACAAGCTGCCGGTCTATTTCATCGGTGTCGGCGAGGGTGTCGACGATCTCGAACCCTTCGAGGC
AAAAGACTTCGCCGAGGCGATCGCCGGTGTTGCGGCCCCATGA

Upstream 100 bases:

>100_bases
GCGATCGCTCGTTGCGGCCGAAATCACCGGCCATAACGGCAAGCATCTGACGATCAAGCGCAAACAGATGGCTGCGGCCT
GATAGCGGACATTCATTCCC

Downstream 100 bases:

>100_bases
CCGCGGAAGCGGTTTTGCAGCCGTACCGACGGTTGATATGGTTTTGCCGCAATCCTGATGTTATGAGCGTCAGACGATGA
CAGAACAGGATCCGCACATG

Product: signal recognition particle-docking protein FtsY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MAIGFIKKIFSFGKDAVDEKPAPPQEVSDAAPSSVPSGEQGESQAPVEEKRTAAEATEAGTDDRDVSLAPSTANTETTSD
EAPAGTAPAADENTVKQDESVPHPISPLAGEMPGRAEESEPPSEHPTGADDVSAPSSVPSGHLPLNGGDHGETEATAENS
GAPVEQAEALAGDADRRSDAGSDIEAELRTSSLPKGFAAADRRPKDETPAAQPKLNWYQRLRLGLARTSSQLTGQIASLF
TKRKLDEATLQDLEDLLIQADLGVETAMRITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILV
VGVNGTGKTTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYEAFQRAREQKADV
LIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVEIFRNVAGVSGLIMTKLDGTARGGILV
AISAKHKLPVYFIGVGEGVDDLEPFEAKDFAEAIAGVAAP

Sequences:

>Translated_520_residues
MAIGFIKKIFSFGKDAVDEKPAPPQEVSDAAPSSVPSGEQGESQAPVEEKRTAAEATEAGTDDRDVSLAPSTANTETTSD
EAPAGTAPAADENTVKQDESVPHPISPLAGEMPGRAEESEPPSEHPTGADDVSAPSSVPSGHLPLNGGDHGETEATAENS
GAPVEQAEALAGDADRRSDAGSDIEAELRTSSLPKGFAAADRRPKDETPAAQPKLNWYQRLRLGLARTSSQLTGQIASLF
TKRKLDEATLQDLEDLLIQADLGVETAMRITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILV
VGVNGTGKTTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYEAFQRAREQKADV
LIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVEIFRNVAGVSGLIMTKLDGTARGGILV
AISAKHKLPVYFIGVGEGVDDLEPFEAKDFAEAIAGVAAP
>Mature_519_residues
AIGFIKKIFSFGKDAVDEKPAPPQEVSDAAPSSVPSGEQGESQAPVEEKRTAAEATEAGTDDRDVSLAPSTANTETTSDE
APAGTAPAADENTVKQDESVPHPISPLAGEMPGRAEESEPPSEHPTGADDVSAPSSVPSGHLPLNGGDHGETEATAENSG
APVEQAEALAGDADRRSDAGSDIEAELRTSSLPKGFAAADRRPKDETPAAQPKLNWYQRLRLGLARTSSQLTGQIASLFT
KRKLDEATLQDLEDLLIQADLGVETAMRITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILVV
GVNGTGKTTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYEAFQRAREQKADVL
IIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVEIFRNVAGVSGLIMTKLDGTARGGILVA
ISAKHKLPVYFIGVGEGVDDLEPFEAKDFAEAIAGVAAP

Specific function: Functional homolog of SRP receptor. Probably involved in the reception and insertion of a subset of proteins at the cytoplasmic membrane [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI226371618, Length=204, Percent_Identity=35.2941176470588, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI4507215, Length=204, Percent_Identity=35.2941176470588, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI295424842, Length=319, Percent_Identity=28.5266457680251, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI23308697, Length=319, Percent_Identity=28.5266457680251, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI89061728, Length=137, Percent_Identity=32.1167883211679, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1789874, Length=322, Percent_Identity=45.0310559006211, Blast_Score=269, Evalue=3e-73,
Organism=Escherichia coli, GI1788963, Length=275, Percent_Identity=30.1818181818182, Blast_Score=121, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17539958, Length=273, Percent_Identity=29.6703296703297, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI193206261, Length=282, Percent_Identity=30.4964539007092, Blast_Score=113, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6325345, Length=205, Percent_Identity=38.0487804878049, Blast_Score=143, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6320498, Length=223, Percent_Identity=29.5964125560538, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17647949, Length=223, Percent_Identity=32.7354260089686, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24641198, Length=290, Percent_Identity=29.6551724137931, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 54487; Mature: 54356

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGFIKKIFSFGKDAVDEKPAPPQEVSDAAPSSVPSGEQGESQAPVEEKRTAAEATEAG
CCHHHHHHHHHHCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
TDDRDVSLAPSTANTETTSDEAPAGTAPAADENTVKQDESVPHPISPLAGEMPGRAEESE
CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
PPSEHPTGADDVSAPSSVPSGHLPLNGGDHGETEATAENSGAPVEQAEALAGDADRRSDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHCCCC
GSDIEAELRTSSLPKGFAAADRRPKDETPAAQPKLNWYQRLRLGLARTSSQLTGQIASLF
CCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TKRKLDEATLQDLEDLLIQADLGVETAMRITDALASERYGKDVSGEDVSRIMAGEITKVL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
APVAKPLELDLNHKPHVILVVGVNGTGKTTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIE
HHHCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
QLKIWAERTRSEIVSSKLGADAAGLAYEAFQRAREQKADVLIIDTAGRLQNKAELMAELE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
KIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVEIFRNVAGVSGLIMTKLDGTARGGILV
HHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
AISAKHKLPVYFIGVGEGVDDLEPFEAKDFAEAIAGVAAP
EEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIGFIKKIFSFGKDAVDEKPAPPQEVSDAAPSSVPSGEQGESQAPVEEKRTAAEATEAG
CHHHHHHHHHHCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
TDDRDVSLAPSTANTETTSDEAPAGTAPAADENTVKQDESVPHPISPLAGEMPGRAEESE
CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
PPSEHPTGADDVSAPSSVPSGHLPLNGGDHGETEATAENSGAPVEQAEALAGDADRRSDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHCCCC
GSDIEAELRTSSLPKGFAAADRRPKDETPAAQPKLNWYQRLRLGLARTSSQLTGQIASLF
CCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TKRKLDEATLQDLEDLLIQADLGVETAMRITDALASERYGKDVSGEDVSRIMAGEITKVL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
APVAKPLELDLNHKPHVILVVGVNGTGKTTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIE
HHHCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
QLKIWAERTRSEIVSSKLGADAAGLAYEAFQRAREQKADVLIIDTAGRLQNKAELMAELE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
KIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVEIFRNVAGVSGLIMTKLDGTARGGILV
HHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
AISAKHKLPVYFIGVGEGVDDLEPFEAKDFAEAIAGVAAP
EEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]