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The map label for this gene is ymdC [H]

Identifier: 150396094

GI number: 150396094

Start: 929076

End: 930638

Strand: Direct

Name: ymdC [H]

Synonym: Smed_0871

Alternate gene names: 150396094

Gene position: 929076-930638 (Clockwise)

Preceding gene: 150396093

Following gene: 150396095

Centisome position: 24.57

GC content: 61.93

Gene sequence:

>1563_bases
ATGTCGTGGATTGCACTTTCTCTTGCGGCGCTCTTTGGACTCCTGCTTGCTGGCGTTCTTTACGTGTATGGCTGGTTTGG
CCGCCGACCAAGTATCGATCCAACCTTCGCGCTTCCCGTGGAAGGGGACGAGACCGGTATCGACAAGCAATTAGCTCCGT
TATTGGAGGCCGCCCGATCCGGCGAGAACGCGGTCGCGCTCATTTCCGACAACATCGAAGCTTTCGTGGCGCGGGCGCTT
TCGGCGCGCCGGGCAGGGCGCAGCCTCGATCTGCAATATTATTACTGGAAGGACGACCTGACAGGATTTCTTCTGACGCG
CGAGGTCATCCGGGCGGCCGATCGCGGTGTCCGCGTCCGCCTGCTGCTCGACGACGTCAATGCAGGCATCCACGACCGTC
TCTGCATTTCGCTCGATGCCCATCCCAATGTCGACGTGCGCCTGTTTAATCCGAGTCGGGCCCGAACGGATCGCTTCCGT
CGCGGGTTCGAATTGGCGATACGTGCCTTCAGTGCGACACGCCGGATGCACAACAAGCTGTGGATTGCCGACGGCCGGCT
GGCGATTTCCGGGGGACGCAATATCGGCGACGCCTATTTCGACGCGGCCGAACTGGCGAACTTCCGAGACCTCGATGTCT
GGATGGCCGGTCCGGTCGTCGATCAGGCGACGGCCATGTTCGACCTTTACTGGAACAGTCCGTCGGTGCTGCCGATTGCG
GCGCTGAGAACGCCGCGTAAGCATTTCCTTCCGGCGCTGAGAGAAGCGCTGGACCAGTTGGCGCGCACGGCCGCCGGGCG
CTTTTACCTGGAAAAGGTTCAGGATGCAGCCGCCGCGGGGCCGGGGGCCTACTGGGGCAGCCGCACCCTCTACCGAAGCG
CGAATCTGCGCTTGGCGTTCGATCCGCCGGAAAAGGCGCTGATGCAGAAGCGGCAGAACTGGTTGCTGCGCGAACTTTTC
CCGCTGATCAAAGGCGCGAAGCGCGATTTGCGGATCATCTCCCCCTATTTCATTCCTGGCGTTGCGGGAACGCGTGTTCT
GGCGCTGCTCGCGGGGAAGGGTGCGAAGGTGGCAGTGCTGACGAACTCGCTCGCGGCAACGGATGTCGCAGCGGTACATG
GCGGTTACGTGAAATACCGCAAGTGGCTGCTGGAAGGGAAAGTGGAGCTGTACGAGCTCAAGGAACGGGGGGACTTCTTC
GATCGTCATCGTATGTCGCTGTTCGGGGCGCGGAACGCCAGCCTGCACACCAAGGCTTTCGTCGTCGACGGCGTCTGCGG
TTATGTGGGTTCCATGAATTTCGATCCGCGGTCCGCGTCGCTCAACACCGAGATGGGGATCGTCTTTTCCGATGAGGCGC
TCGCCTCCGAGATCCAATCGATATTCGAGGAGGAGACGGCGCCGGAGAGAAGCTATCGCCTGATGCTGAAAGACGGCCGG
CTCGCCTGGCAAGACCGGACGAACGGCGCGCTCAGGCTGTTGCGGCGTGAGCCGGATGCGGGCCTTTTCCGAAGGCTGAT
CGCCGGCGCGATCCGTTTTCTGCCCTTGGAGTCGCAGCTTTGA

Upstream 100 bases:

>100_bases
CCTTTTCCATGCCGAGAAGGGTGTCTTAGCGCGCTTGATACATAGGCGTGGCGGTTCTGCGATGGGGAGTGCTTAGCTTC
ATGCGGCAGGGCAGCGTCTG

Downstream 100 bases:

>100_bases
TCGACGAAATTTACGGATCGCTCACCGTCATTTTGCGAATGTCTGTGAGGAAGGCCGGTAGCCCATGCTTAACGGCAGGA
AGAATTGGAAAAATGTTCTA

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MSWIALSLAALFGLLLAGVLYVYGWFGRRPSIDPTFALPVEGDETGIDKQLAPLLEAARSGENAVALISDNIEAFVARAL
SARRAGRSLDLQYYYWKDDLTGFLLTREVIRAADRGVRVRLLLDDVNAGIHDRLCISLDAHPNVDVRLFNPSRARTDRFR
RGFELAIRAFSATRRMHNKLWIADGRLAISGGRNIGDAYFDAAELANFRDLDVWMAGPVVDQATAMFDLYWNSPSVLPIA
ALRTPRKHFLPALREALDQLARTAAGRFYLEKVQDAAAAGPGAYWGSRTLYRSANLRLAFDPPEKALMQKRQNWLLRELF
PLIKGAKRDLRIISPYFIPGVAGTRVLALLAGKGAKVAVLTNSLAATDVAAVHGGYVKYRKWLLEGKVELYELKERGDFF
DRHRMSLFGARNASLHTKAFVVDGVCGYVGSMNFDPRSASLNTEMGIVFSDEALASEIQSIFEEETAPERSYRLMLKDGR
LAWQDRTNGALRLLRREPDAGLFRRLIAGAIRFLPLESQL

Sequences:

>Translated_520_residues
MSWIALSLAALFGLLLAGVLYVYGWFGRRPSIDPTFALPVEGDETGIDKQLAPLLEAARSGENAVALISDNIEAFVARAL
SARRAGRSLDLQYYYWKDDLTGFLLTREVIRAADRGVRVRLLLDDVNAGIHDRLCISLDAHPNVDVRLFNPSRARTDRFR
RGFELAIRAFSATRRMHNKLWIADGRLAISGGRNIGDAYFDAAELANFRDLDVWMAGPVVDQATAMFDLYWNSPSVLPIA
ALRTPRKHFLPALREALDQLARTAAGRFYLEKVQDAAAAGPGAYWGSRTLYRSANLRLAFDPPEKALMQKRQNWLLRELF
PLIKGAKRDLRIISPYFIPGVAGTRVLALLAGKGAKVAVLTNSLAATDVAAVHGGYVKYRKWLLEGKVELYELKERGDFF
DRHRMSLFGARNASLHTKAFVVDGVCGYVGSMNFDPRSASLNTEMGIVFSDEALASEIQSIFEEETAPERSYRLMLKDGR
LAWQDRTNGALRLLRREPDAGLFRRLIAGAIRFLPLESQL
>Mature_519_residues
SWIALSLAALFGLLLAGVLYVYGWFGRRPSIDPTFALPVEGDETGIDKQLAPLLEAARSGENAVALISDNIEAFVARALS
ARRAGRSLDLQYYYWKDDLTGFLLTREVIRAADRGVRVRLLLDDVNAGIHDRLCISLDAHPNVDVRLFNPSRARTDRFRR
GFELAIRAFSATRRMHNKLWIADGRLAISGGRNIGDAYFDAAELANFRDLDVWMAGPVVDQATAMFDLYWNSPSVLPIAA
LRTPRKHFLPALREALDQLARTAAGRFYLEKVQDAAAAGPGAYWGSRTLYRSANLRLAFDPPEKALMQKRQNWLLRELFP
LIKGAKRDLRIISPYFIPGVAGTRVLALLAGKGAKVAVLTNSLAATDVAAVHGGYVKYRKWLLEGKVELYELKERGDFFD
RHRMSLFGARNASLHTKAFVVDGVCGYVGSMNFDPRSASLNTEMGIVFSDEALASEIQSIFEEETAPERSYRLMLKDGRL
AWQDRTNGALRLLRREPDAGLFRRLIAGAIRFLPLESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=466, Percent_Identity=39.2703862660944, Blast_Score=266, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58050; Mature: 57919

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIALSLAALFGLLLAGVLYVYGWFGRRPSIDPTFALPVEGDETGIDKQLAPLLEAARS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHC
GENAVALISDNIEAFVARALSARRAGRSLDLQYYYWKDDLTGFLLTREVIRAADRGVRVR
CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
LLLDDVNAGIHDRLCISLDAHPNVDVRLFNPSRARTDRFRRGFELAIRAFSATRRMHNKL
EEEECCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCEE
WIADGRLAISGGRNIGDAYFDAAELANFRDLDVWMAGPVVDQATAMFDLYWNSPSVLPIA
EEECCEEEEECCCCCCHHHHCHHHHCCCCCCEEEECCCHHHHHHEEEEEEECCCCCEEEH
ALRTPRKHFLPALREALDQLARTAAGRFYLEKVQDAAAAGPGAYWGSRTLYRSANLRLAF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEE
DPPEKALMQKRQNWLLRELFPLIKGAKRDLRIISPYFIPGVAGTRVLALLAGKGAKVAVL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCHHHHHHHHHCCCCCEEEEE
TNSLAATDVAAVHGGYVKYRKWLLEGKVELYELKERGDFFDRHRMSLFGARNASLHTKAF
ECCHHHHHHHHHCCCHHHHHHHHHHCCHHEEEEHHHCCHHHHHHHHHHCCCCCCCEEEEE
VVDGVCGYVGSMNFDPRSASLNTEMGIVFSDEALASEIQSIFEEETAPERSYRLMLKDGR
EECCHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
LAWQDRTNGALRLLRREPDAGLFRRLIAGAIRFLPLESQL
EEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SWIALSLAALFGLLLAGVLYVYGWFGRRPSIDPTFALPVEGDETGIDKQLAPLLEAARS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHC
GENAVALISDNIEAFVARALSARRAGRSLDLQYYYWKDDLTGFLLTREVIRAADRGVRVR
CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
LLLDDVNAGIHDRLCISLDAHPNVDVRLFNPSRARTDRFRRGFELAIRAFSATRRMHNKL
EEEECCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCEE
WIADGRLAISGGRNIGDAYFDAAELANFRDLDVWMAGPVVDQATAMFDLYWNSPSVLPIA
EEECCEEEEECCCCCCHHHHCHHHHCCCCCCEEEECCCHHHHHHEEEEEEECCCCCEEEH
ALRTPRKHFLPALREALDQLARTAAGRFYLEKVQDAAAAGPGAYWGSRTLYRSANLRLAF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEE
DPPEKALMQKRQNWLLRELFPLIKGAKRDLRIISPYFIPGVAGTRVLALLAGKGAKVAVL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCHHHHHHHHHCCCCCEEEEE
TNSLAATDVAAVHGGYVKYRKWLLEGKVELYELKERGDFFDRHRMSLFGARNASLHTKAF
ECCHHHHHHHHHCCCHHHHHHHHHHCCHHEEEEHHHCCHHHHHHHHHHCCCCCCCEEEEE
VVDGVCGYVGSMNFDPRSASLNTEMGIVFSDEALASEIQSIFEEETAPERSYRLMLKDGR
EECCHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
LAWQDRTNGALRLLRREPDAGLFRRLIAGAIRFLPLESQL
EEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]