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The map label for this gene is potC [H]

Identifier: 150395981

GI number: 150395981

Start: 813363

End: 814160

Strand: Direct

Name: potC [H]

Synonym: Smed_0757

Alternate gene names: 150395981

Gene position: 813363-814160 (Clockwise)

Preceding gene: 150395980

Following gene: 150395982

Centisome position: 21.51

GC content: 58.9

Gene sequence:

>798_bases
ATGAGTGCATATCGTCCTGGCCCTCTTGCCCTGTTCTTCGCCTTCGTGGTGATAATCTTCCTGCTGATGCCGCTGCTGGC
TGTCGTACCGGTGTCGTTTACCCCATCGCGCATGCTCTCTATGCCGGCAGGAGAGCTGTCGATCAGGCATTATCGGGCGC
TGTTTGAAGATCCACGCTGGCTCGACAGCATCCTTCTCAGCCTGCGCGTCGGCCTTGTCTCCAGCGTGCTCGCGACGCTC
TTCGCCCTTACATTCAGCCTCGGCATCTGGATGTTCCGGCCACGCTTCACCGCCGTTCTGGTGGGCTTCGTTCTTCTGCC
GATGATCGTCCCGCCGGTTGTCTCCGCAATCACCCTCTACTTTCTGCTCACTTCGATGTCGAACATCGGAAGCATGATCG
GGTACGACACCTGGCTGGGGGTGGTGCTTGCCCATGTCGTGGTTACGGTGCCCTTCGCCGTGGTGCTCATTCTCGTCTCG
CTCGGCCAGGTTGACCGGCGGATCGATCTCGCTGCGCGCGGGCTCGGCGCGTCCACATGGGAAAGGGCGACAAAGGTCAT
CATCCCCAACATCAAATTCGGGATTGCTGCGGCATGGCTCCTGTCTTTCGTGCTTTCCTGGGAGGAGATCGGCGTTACGC
TCTTCATCACCAGCGTCAATGCCATTACCCTTCCACGGCTGATGTGGATGGGTTTGCGTGACAACATCGATCCCGCCATC
GCAGCAATCTCGGTCATCCTGATCCTGATCACCGTTACGGCGATGACGATTCGCATCTTCTTCGCGCGATCCAGGTGA

Upstream 100 bases:

>100_bases
GTCTTGGTGCTGCCATCAGCGTGACCCTCGTCCTGATCGTCGGCCTGCTGACGGCAGCCCTGTTCCGGTTTTTGCGGTTT
TCCCAGATGGCAGGTTGAAG

Downstream 100 bases:

>100_bases
CATGCGGGCGCCGATGATGCGTCCTACGCTCATGTGGACGAGTTCGGCACGGTGCGGATATTGCTTGCGGAGTTCCCCGC
TGTGGCCATAGTGCTTCCCG

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSAYRPGPLALFFAFVVIIFLLMPLLAVVPVSFTPSRMLSMPAGELSIRHYRALFEDPRWLDSILLSLRVGLVSSVLATL
FALTFSLGIWMFRPRFTAVLVGFVLLPMIVPPVVSAITLYFLLTSMSNIGSMIGYDTWLGVVLAHVVVTVPFAVVLILVS
LGQVDRRIDLAARGLGASTWERATKVIIPNIKFGIAAAWLLSFVLSWEEIGVTLFITSVNAITLPRLMWMGLRDNIDPAI
AAISVILILITVTAMTIRIFFARSR

Sequences:

>Translated_265_residues
MSAYRPGPLALFFAFVVIIFLLMPLLAVVPVSFTPSRMLSMPAGELSIRHYRALFEDPRWLDSILLSLRVGLVSSVLATL
FALTFSLGIWMFRPRFTAVLVGFVLLPMIVPPVVSAITLYFLLTSMSNIGSMIGYDTWLGVVLAHVVVTVPFAVVLILVS
LGQVDRRIDLAARGLGASTWERATKVIIPNIKFGIAAAWLLSFVLSWEEIGVTLFITSVNAITLPRLMWMGLRDNIDPAI
AAISVILILITVTAMTIRIFFARSR
>Mature_264_residues
SAYRPGPLALFFAFVVIIFLLMPLLAVVPVSFTPSRMLSMPAGELSIRHYRALFEDPRWLDSILLSLRVGLVSSVLATLF
ALTFSLGIWMFRPRFTAVLVGFVLLPMIVPPVVSAITLYFLLTSMSNIGSMIGYDTWLGVVLAHVVVTVPFAVVLILVSL
GQVDRRIDLAARGLGASTWERATKVIIPNIKFGIAAAWLLSFVLSWEEIGVTLFITSVNAITLPRLMWMGLRDNIDPAIA
AISVILILITVTAMTIRIFFARSR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787081, Length=233, Percent_Identity=27.4678111587983, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788764, Length=186, Percent_Identity=27.9569892473118, Blast_Score=61, Evalue=1e-10,
Organism=Escherichia coli, GI1787080, Length=236, Percent_Identity=25, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29210; Mature: 29079

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYRPGPLALFFAFVVIIFLLMPLLAVVPVSFTPSRMLSMPAGELSIRHYRALFEDPRW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHCCHHH
LDSILLSLRVGLVSSVLATLFALTFSLGIWMFRPRFTAVLVGFVLLPMIVPPVVSAITLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLTSMSNIGSMIGYDTWLGVVLAHVVVTVPFAVVLILVSLGQVDRRIDLAARGLGASTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ERATKVIIPNIKFGIAAAWLLSFVLSWEEIGVTLFITSVNAITLPRLMWMGLRDNIDPAI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCHHH
AAISVILILITVTAMTIRIFFARSR
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAYRPGPLALFFAFVVIIFLLMPLLAVVPVSFTPSRMLSMPAGELSIRHYRALFEDPRW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHCCHHH
LDSILLSLRVGLVSSVLATLFALTFSLGIWMFRPRFTAVLVGFVLLPMIVPPVVSAITLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLTSMSNIGSMIGYDTWLGVVLAHVVVTVPFAVVLILVSLGQVDRRIDLAARGLGASTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ERATKVIIPNIKFGIAAAWLLSFVLSWEEIGVTLFITSVNAITLPRLMWMGLRDNIDPAI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCHHH
AAISVILILITVTAMTIRIFFARSR
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]