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The map label for this gene is ybfI [H]

Identifier: 150395955

GI number: 150395955

Start: 786214

End: 787071

Strand: Direct

Name: ybfI [H]

Synonym: Smed_0731

Alternate gene names: 150395955

Gene position: 786214-787071 (Clockwise)

Preceding gene: 150395949

Following gene: 150395956

Centisome position: 20.79

GC content: 61.19

Gene sequence:

>858_bases
ATGGAAACGATCTCACAGGAAAAGGCCATCGAGGCCATGCCGCTCGAGGGGGTCGAGCGAACGCGATTCTGGCGCGATGC
GCGCTTCAAGGGGATGGAGTGCCTGAGCGCGACGTTCATCACGCATGAATTCGCGCCGCATGCGCACGACACGTTCAGCA
TCGGCGCGATCGAAGCGGGCTCTCAGATAAGCACGATCAAGGGTGAGCGGTCGCAGACGGGGCCGGGAGATCTCTATCTC
ATCAACCCCGATGAGATCCACGACGGGCATCCGGGCCATGACGGCTATCGATACCGGATGATCTATCCGTCGTCGGAACT
GCTCGTAGAGACAATCGAGGATGTCACCGGCCGTTCCTTCAAAGGGACGCCGTCCTTCTCGCGGCTGCTTCTCACCGATA
GGGAGCTCGCGGTCGGATTTCATCGCGCCCATCGCGCGTTGGAAGGCAAGGTCGGAACGCTGGAGGCGGACGAGAGCATG
TTTGGTTTCCTGGCCAGGCTCTTCGAACGGCATGGCAGCGCCATCATCGTCCCCCTGCAGACGCGCGAGAGTTCAGCCGT
GCACCGGGCGCGAGATTATCTCGTTGGAAACTACAGGTTCGACGTCGGACTGGAGGAACTTGCGAAGGTGGCGGGCCTCA
GCCGCGCCCATTTGATCCGTGCCTTCCGAAAGGAATTCCACATCACTCCGCATGCTTTTCTCACCGACAAGCGCGTGCGC
GAGGCAAAAGCGCTTCTTCGCAAGGGCTGGTCTGCAGCGGACACCGCATACTATTGCGGTTTCGCGGATCAGGCGCATTT
CAGCCGGCATTTCAAGGCTCGAACCGGCGTCACGCCGCGGGCCTACCGCTCAGCCTGA

Upstream 100 bases:

>100_bases
AATACATCCAAGCGCCGTCAGCCGCAAACGGCGGCGGCAAGGATCGGCCCGAAGCATTTTTATACAAGACGAGCGTTTTC
GCGCCCGGTAGGATTAACCG

Downstream 100 bases:

>100_bases
TCACTTTCGTTCAAGACGGGACGTCTTCTGTCTGATACCAGCCCTCGTCGCAAGCACGGGAGATCGCGGGCGTGAAAAAG
ACGCGGGCAGTCGAGGAATT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
METISQEKAIEAMPLEGVERTRFWRDARFKGMECLSATFITHEFAPHAHDTFSIGAIEAGSQISTIKGERSQTGPGDLYL
INPDEIHDGHPGHDGYRYRMIYPSSELLVETIEDVTGRSFKGTPSFSRLLLTDRELAVGFHRAHRALEGKVGTLEADESM
FGFLARLFERHGSAIIVPLQTRESSAVHRARDYLVGNYRFDVGLEELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVR
EAKALLRKGWSAADTAYYCGFADQAHFSRHFKARTGVTPRAYRSA

Sequences:

>Translated_285_residues
METISQEKAIEAMPLEGVERTRFWRDARFKGMECLSATFITHEFAPHAHDTFSIGAIEAGSQISTIKGERSQTGPGDLYL
INPDEIHDGHPGHDGYRYRMIYPSSELLVETIEDVTGRSFKGTPSFSRLLLTDRELAVGFHRAHRALEGKVGTLEADESM
FGFLARLFERHGSAIIVPLQTRESSAVHRARDYLVGNYRFDVGLEELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVR
EAKALLRKGWSAADTAYYCGFADQAHFSRHFKARTGVTPRAYRSA
>Mature_285_residues
METISQEKAIEAMPLEGVERTRFWRDARFKGMECLSATFITHEFAPHAHDTFSIGAIEAGSQISTIKGERSQTGPGDLYL
INPDEIHDGHPGHDGYRYRMIYPSSELLVETIEDVTGRSFKGTPSFSRLLLTDRELAVGFHRAHRALEGKVGTLEADESM
FGFLARLFERHGSAIIVPLQTRESSAVHRARDYLVGNYRFDVGLEELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVR
EAKALLRKGWSAADTAYYCGFADQAHFSRHFKARTGVTPRAYRSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32112; Mature: 32112

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METISQEKAIEAMPLEGVERTRFWRDARFKGMECLSATFITHEFAPHAHDTFSIGAIEAG
CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
SQISTIKGERSQTGPGDLYLINPDEIHDGHPGHDGYRYRMIYPSSELLVETIEDVTGRSF
CCEEECCCCCCCCCCCCEEEECCHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
KGTPSFSRLLLTDRELAVGFHRAHRALEGKVGTLEADESMFGFLARLFERHGSAIIVPLQ
CCCCCHHHHEECCHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCEEEEEEC
TRESSAVHRARDYLVGNYRFDVGLEELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVR
CCCHHHHHHHHHHEEECEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAKALLRKGWSAADTAYYCGFADQAHFSRHFKARTGVTPRAYRSA
HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
METISQEKAIEAMPLEGVERTRFWRDARFKGMECLSATFITHEFAPHAHDTFSIGAIEAG
CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
SQISTIKGERSQTGPGDLYLINPDEIHDGHPGHDGYRYRMIYPSSELLVETIEDVTGRSF
CCEEECCCCCCCCCCCCEEEECCHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
KGTPSFSRLLLTDRELAVGFHRAHRALEGKVGTLEADESMFGFLARLFERHGSAIIVPLQ
CCCCCHHHHEECCHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCEEEEEEC
TRESSAVHRARDYLVGNYRFDVGLEELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVR
CCCHHHHHHHHHHEEECEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAKALLRKGWSAADTAYYCGFADQAHFSRHFKARTGVTPRAYRSA
HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]