Click here to switch to the map view.

The map label for this gene is sodC1 [H]

Identifier: 150395926

GI number: 150395926

Start: 758299

End: 758817

Strand: Direct

Name: sodC1 [H]

Synonym: Smed_0702

Alternate gene names: 150395926

Gene position: 758299-758817 (Clockwise)

Preceding gene: 150395925

Following gene: 150395935

Centisome position: 20.05

GC content: 62.24

Gene sequence:

>519_bases
ATGATGAGAACGATGATCGCGATCGCCGTTGCGGCCGGAATGGCAAGCGCCGCCTCGGCGCAACAATCCTCGCAGACGGC
GACGGCCGAGTTCATGGGCAAGGACGGCACGGATATTGGACGGGCCACTTTGACGGCAGGCGGCAAGGGCGTGCTGATCG
AAATGGAGATAAGCGGCCTGCCGAAAGATAGCTGGGTCGCCTTTCACGCTCACGAAATGGGGCGGTGTGACCCCAAGGAG
GGTTTCGAGTCCGCGGGCAAGCATTTCGCCGGCAAGGACGAGAATACCGAGCATGGTTTTCTGGCCGCGAACGGCCCGCA
TGCAGGCGATATGCCGAACCAGTATGTCGGCGCCGACGGAACCCTGCGCGCGCATGTGTTCAACAGCTTCGTTTCCCTCG
ACGACGCCGGCAACGGTCTTCGCGGCCGCGCTTTGGTAATCCACATGCATTCGGACGACAATCGCAGCCAACCGTCTGGC
GATGCAGGCGACCGGCTGGCCTGCGCGGTGGTGAAATAA

Upstream 100 bases:

>100_bases
GCTTCTCGGGGCTTACCACAACTCCACCGCGTTCTAACGGAACGACCGCGGCAGCCGCGCGTTGTTCCCGATCAACCCGC
GCGTGAGAGGGAGAACTCCG

Downstream 100 bases:

>100_bases
TGCATGCCGCCCCGTGAAGGGTCTTTCAGCTCGAGGACTTTGTCCGGCTGGATTGGGCGCCAGGCAGGGCCGTTCAGCGC
CCGCCGACCTTGAGACCCGG

Product: superoxide dismutase copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MMRTMIAIAVAAGMASAASAQQSSQTATAEFMGKDGTDIGRATLTAGGKGVLIEMEISGLPKDSWVAFHAHEMGRCDPKE
GFESAGKHFAGKDENTEHGFLAANGPHAGDMPNQYVGADGTLRAHVFNSFVSLDDAGNGLRGRALVIHMHSDDNRSQPSG
DAGDRLACAVVK

Sequences:

>Translated_172_residues
MMRTMIAIAVAAGMASAASAQQSSQTATAEFMGKDGTDIGRATLTAGGKGVLIEMEISGLPKDSWVAFHAHEMGRCDPKE
GFESAGKHFAGKDENTEHGFLAANGPHAGDMPNQYVGADGTLRAHVFNSFVSLDDAGNGLRGRALVIHMHSDDNRSQPSG
DAGDRLACAVVK
>Mature_172_residues
MMRTMIAIAVAAGMASAASAQQSSQTATAEFMGKDGTDIGRATLTAGGKGVLIEMEISGLPKDSWVAFHAHEMGRCDPKE
GFESAGKHFAGKDENTEHGFLAANGPHAGDMPNQYVGADGTLRAHVFNSFVSLDDAGNGLRGRALVIHMHSDDNRSQPSG
DAGDRLACAVVK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=177, Percent_Identity=32.2033898305085, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17915; Mature: 17915

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTMIAIAVAAGMASAASAQQSSQTATAEFMGKDGTDIGRATLTAGGKGVLIEMEISGL
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEECCC
PKDSWVAFHAHEMGRCDPKEGFESAGKHFAGKDENTEHGFLAANGPHAGDMPNQYVGADG
CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCC
TLRAHVFNSFVSLDDAGNGLRGRALVIHMHSDDNRSQPSGDAGDRLACAVVK
EEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MMRTMIAIAVAAGMASAASAQQSSQTATAEFMGKDGTDIGRATLTAGGKGVLIEMEISGL
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEECCC
PKDSWVAFHAHEMGRCDPKEGFESAGKHFAGKDENTEHGFLAANGPHAGDMPNQYVGADG
CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCC
TLRAHVFNSFVSLDDAGNGLRGRALVIHMHSDDNRSQPSGDAGDRLACAVVK
EEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]