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The map label for this gene is ybeY [C]

Identifier: 150395270

GI number: 150395270

Start: 43610

End: 44116

Strand: Direct

Name: ybeY [C]

Synonym: Smed_0042

Alternate gene names: 150395270

Gene position: 43610-44116 (Clockwise)

Preceding gene: 150395269

Following gene: 150395271

Centisome position: 1.15

GC content: 57.99

Gene sequence:

>507_bases
ATGACGGCATTGGACATTCAGATCAGCGTCGAGGCGGGCGACTGGCCGCCCGAGGACGAGCTTCAGTCTTTTTCCGAGGT
CGTTCTCGAGGCTGCCGCCGATTTTCTCGCGCGTGAGGAGAGGCAGCCACTTTCGGCGGAAGCGGCTGAGCTGTCGCTTG
TCTTTACGGACGATCAATCGATCAAAGCAATCAATGCGGAATGGCGAGGCCAGGACAAGCCGACCAATGTTCTGTCGTTT
CCCGCATTTCCTGTGACGCCAGGCAAGATGCCGGGCCTGATGCTCGGCGACATTGTGGTGGCCCACGAGACCTTGAGGCG
CGAAGCGGCGGAGCTCGAAAAGCCTTTCGATGCGCATTTGACGCACCTTCTCGTCCATGGATTCCTGCATCTTTTCGGGT
ATGATCATATCGAAGACGACGAAGCGGAGAGAATGGAGCGGTTGGAGACTCGCATTTTGGCGCGTCTTGGCCTATCTGAT
CCCTACGGGGACCTTCCCCCGGTTTGA

Upstream 100 bases:

>100_bases
GGCGGTTCACGACGAGAGCGAGCAGGGCGATCGTTGATCTTGTTTATTGCGTGATTTACCCGGAGAGGAGCCTCGCTTTT
CGGATCGCGGGCGGTCGACG

Downstream 100 bases:

>100_bases
CAGTTTGGAACAATGAGCGACTTCAAGACAGAGCCGGCCGCTGTCGCGACCGAGGAGGCTGAAGCCTCCGGCGACGCCGA
GGCCGGTAGTAGTACCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTALDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQSIKAINAEWRGQDKPTNVLSF
PAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSD
PYGDLPPV

Sequences:

>Translated_168_residues
MTALDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQSIKAINAEWRGQDKPTNVLSF
PAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSD
PYGDLPPV
>Mature_167_residues
TALDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQSIKAINAEWRGQDKPTNVLSFP
AFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSDP
YGDLPPV

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=160, Percent_Identity=43.75, Blast_Score=107, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18729; Mature: 18598

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQS
CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
IKAINAEWRGQDKPTNVLSFPAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHL
CEEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
THLLVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSDPYGDLPPV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TALDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQS
CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
IKAINAEWRGQDKPTNVLSFPAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHL
CEEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
THLLVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSDPYGDLPPV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]