| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150008169
Identifier: 150008169
GI number: 150008169
Start: 1799176
End: 1800618
Strand: Reverse
Name: 150008169
Synonym: BDI_1535
Alternate gene names: NA
Gene position: 1800618-1799176 (Counterclockwise)
Preceding gene: 150008170
Following gene: 150008168
Centisome position: 37.42
GC content: 46.5
Gene sequence:
>1443_bases ATGGTGAGTAATATAGTATCTTACAGTATTCTTTTGCTGTATCTTCTTCCATGCGCTTCATGGAGCCAAGGGAACGATGT GGATTTAAGCTTGGAACAATCTCTCGACCTGCTTCATAAGGAAAATAAAAGCTTGAAAATAGCCGGGAAAGAAGTGGAAT GGGCTCGGAATGAGCATCAAAAGCTAAACGCTTTTTGGTATCCGTCGGTGAACGCCGCGGGTGCTTTCGTACATATGTCG AATCCGATAGAGGTACGGCAGTCGCTGAGTAAATATACGGAACCGGCGAAGGAGTTTGTCCATAATTATATCCCGGATAA TGAGCTGATCATGTCGGTATTGGATAAGATCGGGCAAGGTACTTTCTCGCTTCCGCTGATCTCCCAAAACATCACTTCTA TAGACGCTACGGTGACGTGGCCTGTTTTCACGGGAGGAAAACGTATCTACGCGAACAAGATCGGAAAGACGATGGTCTCT ATAGCGGAGGTGAATAGGAATCAAGTGGATGCCAACCAACAATCCTTATTGATCGAGGCTTATTTCGGGCTTCGTCTGGG ACAAAGTGTGGTGGACGTAAAAACGGAAGTGTACAATTCTTTGAAAACCCATTATGACCAAGCCCTTAAATTAGAGCAAA ACGGGATGATCAATCGGGCCGAGCGTCTGTTCGCTCAGGTAAGTATGGACGAGGCGAAACGAGAACTGGAATCGGCCCGT AAGGATTTAACGGTCGCTCAACAGGCGTTTAAAAGCTTGATTAATATGGAGGAGGGGAGTGACGTACGTACCACGACTCC TTTATTCATTAATGAGGCGCTTCCTCCGGCTCAATACTTCAAGGATCTGGTTCCGATGAATAATTATATAGTCAATCAAT TGAAATTGCAGCAGGTTGTAGCCGATAATCAACTAAAGATCGGCCGGTCCGCTTATGTCCCGAATATCGCTTTATTCGGC AAACAGACTTTGTACGCTGATGGACTGGATAAATATTTGTTGCCTCGTACGATGGTGGGAGTTGGTTTTACGTGGAATAT TTTTGATGGCTTGAACCGGGAGAAAACCATCCGGCAGGCAAAGATCGCTAGTCAGTCGCTTCGTTTGGGTAAGGAGAAGG CGATTACGGATCTGGAGGTCGGTATCGATAAATTCTACAGCCAGCTACAAAATGCCTTGGATAACGTAAAGGCTTTGGAT ACGACGATCGAGATGAGCCGGGAACTGGTCCGGGTGCGGAAGAAATCCTTCCAAGAGGGAATGGCTACTTCTACGGAGGT AGTCGATGCCGAGGTTATGCTGGCGAAGGTGAAGACCGCTTTTCTTTTGGCTTATTATCAGTATGATGTAGCCTTGATTA ATCTGCTGTCTGTCTGCGGTACGCCGGAGCAGTTCCACCAATACAAGATGGAGGGAAAGACCGAGGAGCTTTTGGGGAAT TGA
Upstream 100 bases:
>100_bases CTGGTTACTTGGTTCCTTCCCAACTTGAAAAAGAAGTAAAAACAATCCTCCCTTTTTCGCTGTTATTACTCCAACTGAAC GTCAATTACTAAATGAGTTT
Downstream 100 bases:
>100_bases AAATTGAGAATTGAAAATTTAGGAGTTATGGATAAAACTAAGAGATATTTGAGTGTGGCCTTCGTCGCAGTCTTGGCGAT TGTTATAGTTGTCTCGTTGA
Product: putative outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein; Outer Membrane Efflux Family Protein; Type I Secretion Outer Membrane Protein; LipD Protein; RND Family Drug Transporter; Outer Membrane Efflux Protein Domain Protein; Outer Membrane Protein-Like; RND Family Efflux Pump Outer Membrane Protein
Number of amino acids: Translated: 480; Mature: 480
Protein sequence:
>480_residues MVSNIVSYSILLLYLLPCASWSQGNDVDLSLEQSLDLLHKENKSLKIAGKEVEWARNEHQKLNAFWYPSVNAAGAFVHMS NPIEVRQSLSKYTEPAKEFVHNYIPDNELIMSVLDKIGQGTFSLPLISQNITSIDATVTWPVFTGGKRIYANKIGKTMVS IAEVNRNQVDANQQSLLIEAYFGLRLGQSVVDVKTEVYNSLKTHYDQALKLEQNGMINRAERLFAQVSMDEAKRELESAR KDLTVAQQAFKSLINMEEGSDVRTTTPLFINEALPPAQYFKDLVPMNNYIVNQLKLQQVVADNQLKIGRSAYVPNIALFG KQTLYADGLDKYLLPRTMVGVGFTWNIFDGLNREKTIRQAKIASQSLRLGKEKAITDLEVGIDKFYSQLQNALDNVKALD TTIEMSRELVRVRKKSFQEGMATSTEVVDAEVMLAKVKTAFLLAYYQYDVALINLLSVCGTPEQFHQYKMEGKTEELLGN
Sequences:
>Translated_480_residues MVSNIVSYSILLLYLLPCASWSQGNDVDLSLEQSLDLLHKENKSLKIAGKEVEWARNEHQKLNAFWYPSVNAAGAFVHMS NPIEVRQSLSKYTEPAKEFVHNYIPDNELIMSVLDKIGQGTFSLPLISQNITSIDATVTWPVFTGGKRIYANKIGKTMVS IAEVNRNQVDANQQSLLIEAYFGLRLGQSVVDVKTEVYNSLKTHYDQALKLEQNGMINRAERLFAQVSMDEAKRELESAR KDLTVAQQAFKSLINMEEGSDVRTTTPLFINEALPPAQYFKDLVPMNNYIVNQLKLQQVVADNQLKIGRSAYVPNIALFG KQTLYADGLDKYLLPRTMVGVGFTWNIFDGLNREKTIRQAKIASQSLRLGKEKAITDLEVGIDKFYSQLQNALDNVKALD TTIEMSRELVRVRKKSFQEGMATSTEVVDAEVMLAKVKTAFLLAYYQYDVALINLLSVCGTPEQFHQYKMEGKTEELLGN >Mature_480_residues MVSNIVSYSILLLYLLPCASWSQGNDVDLSLEQSLDLLHKENKSLKIAGKEVEWARNEHQKLNAFWYPSVNAAGAFVHMS NPIEVRQSLSKYTEPAKEFVHNYIPDNELIMSVLDKIGQGTFSLPLISQNITSIDATVTWPVFTGGKRIYANKIGKTMVS IAEVNRNQVDANQQSLLIEAYFGLRLGQSVVDVKTEVYNSLKTHYDQALKLEQNGMINRAERLFAQVSMDEAKRELESAR KDLTVAQQAFKSLINMEEGSDVRTTTPLFINEALPPAQYFKDLVPMNNYIVNQLKLQQVVADNQLKIGRSAYVPNIALFG KQTLYADGLDKYLLPRTMVGVGFTWNIFDGLNREKTIRQAKIASQSLRLGKEKAITDLEVGIDKFYSQLQNALDNVKALD TTIEMSRELVRVRKKSFQEGMATSTEVVDAEVMLAKVKTAFLLAYYQYDVALINLLSVCGTPEQFHQYKMEGKTEELLGN
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54093; Mature: 54093
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSNIVSYSILLLYLLPCASWSQGNDVDLSLEQSLDLLHKENKSLKIAGKEVEWARNEHQ CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHH KLNAFWYPSVNAAGAFVHMSNPIEVRQSLSKYTEPAKEFVHNYIPDNELIMSVLDKIGQG HCCEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC TFSLPLISQNITSIDATVTWPVFTGGKRIYANKIGKTMVSIAEVNRNQVDANQQSLLIEA CEECCCHHCCCCCCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH YFGLRLGQSVVDVKTEVYNSLKTHYDQALKLEQNGMINRAERLFAQVSMDEAKRELESAR HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH KDLTVAQQAFKSLINMEEGSDVRTTTPLFINEALPPAQYFKDLVPMNNYIVNQLKLQQVV HHHHHHHHHHHHHHCCCCCCCCEECCCCCEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH ADNQLKIGRSAYVPNIALFGKQTLYADGLDKYLLPRTMVGVGFTWNIFDGLNREKTIRQA HCCCCCCCCHHCCCCEEECCCCHHHHCCCHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHH KIASQSLRLGKEKAITDLEVGIDKFYSQLQNALDNVKALDTTIEMSRELVRVRKKSFQEG HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC MATSTEVVDAEVMLAKVKTAFLLAYYQYDVALINLLSVCGTPEQFHQYKMEGKTEELLGN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCC >Mature Secondary Structure MVSNIVSYSILLLYLLPCASWSQGNDVDLSLEQSLDLLHKENKSLKIAGKEVEWARNEHQ CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHH KLNAFWYPSVNAAGAFVHMSNPIEVRQSLSKYTEPAKEFVHNYIPDNELIMSVLDKIGQG HCCEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC TFSLPLISQNITSIDATVTWPVFTGGKRIYANKIGKTMVSIAEVNRNQVDANQQSLLIEA CEECCCHHCCCCCCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH YFGLRLGQSVVDVKTEVYNSLKTHYDQALKLEQNGMINRAERLFAQVSMDEAKRELESAR HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH KDLTVAQQAFKSLINMEEGSDVRTTTPLFINEALPPAQYFKDLVPMNNYIVNQLKLQQVV HHHHHHHHHHHHHHCCCCCCCCEECCCCCEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH ADNQLKIGRSAYVPNIALFGKQTLYADGLDKYLLPRTMVGVGFTWNIFDGLNREKTIRQA HCCCCCCCCHHCCCCEEECCCCHHHHCCCHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHH KIASQSLRLGKEKAITDLEVGIDKFYSQLQNALDNVKALDTTIEMSRELVRVRKKSFQEG HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC MATSTEVVDAEVMLAKVKTAFLLAYYQYDVALINLLSVCGTPEQFHQYKMEGKTEELLGN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA