| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is bga [H]
Identifier: 150008152
GI number: 150008152
Start: 1775003
End: 1777309
Strand: Reverse
Name: bga [H]
Synonym: BDI_1518
Alternate gene names: 150008152
Gene position: 1777309-1775003 (Counterclockwise)
Preceding gene: 150008153
Following gene: 150008151
Centisome position: 36.94
GC content: 53.19
Gene sequence:
>2307_bases ATGGATTCCATGAAAAAGAAAATCGCCTATCTATTGCTCCTTTTGATGCTGATACCTGTCGGCTCGTTCGCCAAGGAGAA ACGTACGTTCGAGATCAAGGACGGTCATTTTTATGTAAACGGGAAGGTAACCCCGATCCTCTCGGGTGAGATGCATTACC CTCGTATCCCTCATCAATATTGGCGGCATCGCCTTCGGATGATGCGAGCGATGGGCTTGAATACGGTCGCTACCTATGTC TTCTGGAACCTGCACGAGACGGAGCCGGGTAAATGGGATTTCGAGGGAGACAAGAATCTGGCCGAGTATATCCGGATAGC GGGAGAGGAGGGATTGATGGTGATCCTCCGTCCCGGCCCGTACGTATGCGCCGAGTGGGAGTTCGGTGGTTATCCGTGGT GGTTGCAGAATATACCGGGCATGGAGATCCGCCGGGATAACCCGGAGTTCTTGAAACGCACGAAGCTTTATATCGATAAG CTTTACGAGCAGGTCGGCGACTTGCAGGTGTCGAAAGGCGGCCCTATCATCATGGTGCAGGCCGAGAACGAGTTCGGCTC TTACGTGGCGCAACGTAAGGATATCCCCTTGGAGGAGCATCGCCGCTACAACGCCAAGATCAAGCGGCAATTGGCGGACG CCGGTTTCAACGTGCCTCTGTTCACCTCGGACGGAAGCTGGTTGTTCGAGGGCGGTTCCACCCCGGGAGCGTTGCCTACG GCGAACGGGGAGAGCAACGTGGAGAACTTGAAAAAGGTGGTGAACGAGTATCACGGGGGAGTAGGCCCGTATATGGTAGC CGAGTTTTATCCCGGTTGGCTGATGCACTGGGCGGAACCATTCCCCGATATAAGCGATTCCGGCATAGCGAGGCAGACGG AGACGTACCTCCAAAACGATGTCTCTTTCAATTTCTATATGGTTCATGGCGGTACGAATTTCGGTTTCACCAGTGGCGCC AATTACGACAAGAAGCATGATATCCAGCCGGACTTGACCAGCTACGACTACGACGCCCCGATCAGCGAGGCGGGTTGGGT GACCCCGAAGTTCGACTCGATCCGCAACGTGATCCGGAAATACGTCACTTATGACGTCCCCGAGGCCCCAGCCCCTATAC CGCTGATCGAGATCCCGTCGATCTCCTTGACGAAGGTAGCCGATGTGTTGGCCTTGGCGAAAGAAGGGGAACCAGTAGCG TCTCCGACACCTCTCACGTTCGAGCAATTGAACCAAGGATACGGCTACGTCTTGTACTCTACCCATTTCAACCAACCCCT GAAAGGCCGTTTGGAGATACCGGGCTTGCGTGATTACGCTACGATCTACGTGGATGGCGAGCGTGTCGGCGAGTTAAACC GTTGCTTCAACCAATATGCGATGGAAATCGATATCCCGTTCAACGCTACCTTGGACATCTTGGTGGAGAACATGGGGCGT ATCAATTATGGCGAGGAGATCGTACGCAATACGAAGGGGATCATCAGCTCGGTCAAGATTAACGGCAGCGAGATATCGGA CTGGAAGATGTACAAGCTCCCGATGGACCGGATGCCGGCTTTGGTCTCCGGCGAACCTTATGTCTATAAGAATGGCTCGC CCGAGGTAGCGGCGTTGGGGAATAAGCCGGTTCTCTACGAGGGAACCTTCCACCTGTCCGATACCGGCGATACGTTCATC GACATGGAGGATTGGGGAAAGGGCATTATTTTCATCAATGGCGTCAATATCGGCCGCTATTGGTATGCCGGCCCTCAGCA AACGCTTTACATACCGGGCGTATGGCTGAACAAAGGAGAGAATAAGATCGTTATTTATGAGCAGCTGAATAATGACCGGA AGTCGAGCGTACGGACGGTCAAGACTCCTGTCTTGACAAAACTAAAGAAAATTGCAGCCATGGAGAAAAAGAATCGTTTG ATGGAAAAAACAGTAAGCCCGTTTAGCGTGGATGAGACGATGCGGCGGATCGAGGAGATTATCAAGTCTCAAGGAGGTTC CGTGTTCGCCATGTTCGATCATGGGCGAAACGCTAGCGAGGTAGGGATGAAGCTGCCTCCGAATAAGGTGATCGTCTTCG GCTCACCGAAAGTCGGGACTTTATTGATGCAGCAAGATCCGTCTATCTCTTTGGAGCTGCCGCTACGTATCTCCGTTTGG GAAGATGCGGACGGCAAGGTTTGGGTCGGTTCCCCGAATCTGGAGACGATCGCCTCCGAATACGGGATGGAAAACAGCGG CGTCATCGAGAAGATGCAAGAGGCCGTAACGAATATCGTGAGTAAATCGATAGCTGGTAGCCGGTAA
Upstream 100 bases:
>100_bases AATATATAAGCTAGAGAGGATGTCATTTATTTGGCATCCTCTTTTTATTTACATACATTTGCCACGAGATCTTAAACCTA AAAATAAATCTTTATAACAC
Downstream 100 bases:
>100_bases GGCTCATGGATCTAATGCGATAAGAGCTTAGGAGGATGTCGGTAAAACGGCGTCCTCTTTTCTTTTATATGGCCCAAGAG ACTCATTTACCGTGCTGTAG
Product: beta-glycosidase
Products: NA
Alternate protein names: Lactase [H]
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MDSMKKKIAYLLLLLMLIPVGSFAKEKRTFEIKDGHFYVNGKVTPILSGEMHYPRIPHQYWRHRLRMMRAMGLNTVATYV FWNLHETEPGKWDFEGDKNLAEYIRIAGEEGLMVILRPGPYVCAEWEFGGYPWWLQNIPGMEIRRDNPEFLKRTKLYIDK LYEQVGDLQVSKGGPIIMVQAENEFGSYVAQRKDIPLEEHRRYNAKIKRQLADAGFNVPLFTSDGSWLFEGGSTPGALPT ANGESNVENLKKVVNEYHGGVGPYMVAEFYPGWLMHWAEPFPDISDSGIARQTETYLQNDVSFNFYMVHGGTNFGFTSGA NYDKKHDIQPDLTSYDYDAPISEAGWVTPKFDSIRNVIRKYVTYDVPEAPAPIPLIEIPSISLTKVADVLALAKEGEPVA SPTPLTFEQLNQGYGYVLYSTHFNQPLKGRLEIPGLRDYATIYVDGERVGELNRCFNQYAMEIDIPFNATLDILVENMGR INYGEEIVRNTKGIISSVKINGSEISDWKMYKLPMDRMPALVSGEPYVYKNGSPEVAALGNKPVLYEGTFHLSDTGDTFI DMEDWGKGIIFINGVNIGRYWYAGPQQTLYIPGVWLNKGENKIVIYEQLNNDRKSSVRTVKTPVLTKLKKIAAMEKKNRL MEKTVSPFSVDETMRRIEEIIKSQGGSVFAMFDHGRNASEVGMKLPPNKVIVFGSPKVGTLLMQQDPSISLELPLRISVW EDADGKVWVGSPNLETIASEYGMENSGVIEKMQEAVTNIVSKSIAGSR
Sequences:
>Translated_768_residues MDSMKKKIAYLLLLLMLIPVGSFAKEKRTFEIKDGHFYVNGKVTPILSGEMHYPRIPHQYWRHRLRMMRAMGLNTVATYV FWNLHETEPGKWDFEGDKNLAEYIRIAGEEGLMVILRPGPYVCAEWEFGGYPWWLQNIPGMEIRRDNPEFLKRTKLYIDK LYEQVGDLQVSKGGPIIMVQAENEFGSYVAQRKDIPLEEHRRYNAKIKRQLADAGFNVPLFTSDGSWLFEGGSTPGALPT ANGESNVENLKKVVNEYHGGVGPYMVAEFYPGWLMHWAEPFPDISDSGIARQTETYLQNDVSFNFYMVHGGTNFGFTSGA NYDKKHDIQPDLTSYDYDAPISEAGWVTPKFDSIRNVIRKYVTYDVPEAPAPIPLIEIPSISLTKVADVLALAKEGEPVA SPTPLTFEQLNQGYGYVLYSTHFNQPLKGRLEIPGLRDYATIYVDGERVGELNRCFNQYAMEIDIPFNATLDILVENMGR INYGEEIVRNTKGIISSVKINGSEISDWKMYKLPMDRMPALVSGEPYVYKNGSPEVAALGNKPVLYEGTFHLSDTGDTFI DMEDWGKGIIFINGVNIGRYWYAGPQQTLYIPGVWLNKGENKIVIYEQLNNDRKSSVRTVKTPVLTKLKKIAAMEKKNRL MEKTVSPFSVDETMRRIEEIIKSQGGSVFAMFDHGRNASEVGMKLPPNKVIVFGSPKVGTLLMQQDPSISLELPLRISVW EDADGKVWVGSPNLETIASEYGMENSGVIEKMQEAVTNIVSKSIAGSR >Mature_768_residues MDSMKKKIAYLLLLLMLIPVGSFAKEKRTFEIKDGHFYVNGKVTPILSGEMHYPRIPHQYWRHRLRMMRAMGLNTVATYV FWNLHETEPGKWDFEGDKNLAEYIRIAGEEGLMVILRPGPYVCAEWEFGGYPWWLQNIPGMEIRRDNPEFLKRTKLYIDK LYEQVGDLQVSKGGPIIMVQAENEFGSYVAQRKDIPLEEHRRYNAKIKRQLADAGFNVPLFTSDGSWLFEGGSTPGALPT ANGESNVENLKKVVNEYHGGVGPYMVAEFYPGWLMHWAEPFPDISDSGIARQTETYLQNDVSFNFYMVHGGTNFGFTSGA NYDKKHDIQPDLTSYDYDAPISEAGWVTPKFDSIRNVIRKYVTYDVPEAPAPIPLIEIPSISLTKVADVLALAKEGEPVA SPTPLTFEQLNQGYGYVLYSTHFNQPLKGRLEIPGLRDYATIYVDGERVGELNRCFNQYAMEIDIPFNATLDILVENMGR INYGEEIVRNTKGIISSVKINGSEISDWKMYKLPMDRMPALVSGEPYVYKNGSPEVAALGNKPVLYEGTFHLSDTGDTFI DMEDWGKGIIFINGVNIGRYWYAGPQQTLYIPGVWLNKGENKIVIYEQLNNDRKSSVRTVKTPVLTKLKKIAAMEKKNRL MEKTVSPFSVDETMRRIEEIIKSQGGSVFAMFDHGRNASEVGMKLPPNKVIVFGSPKVGTLLMQQDPSISLELPLRISVW EDADGKVWVGSPNLETIASEYGMENSGVIEKMQEAVTNIVSKSIAGSR
Specific function: Preferentially hydrolyzes beta(1->3) galactosyl linkages over beta(1->4) linkages [H]
COG id: COG1874
COG function: function code G; Beta-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 35 family [H]
Homologues:
Organism=Homo sapiens, GI31543093, Length=599, Percent_Identity=37.3956594323873, Blast_Score=355, Evalue=1e-97, Organism=Homo sapiens, GI119372308, Length=611, Percent_Identity=37.152209492635, Blast_Score=340, Evalue=4e-93, Organism=Homo sapiens, GI119372312, Length=599, Percent_Identity=37.228714524207, Blast_Score=338, Evalue=1e-92, Organism=Homo sapiens, GI164519026, Length=603, Percent_Identity=34.9917081260365, Blast_Score=335, Evalue=9e-92, Organism=Homo sapiens, GI40255043, Length=642, Percent_Identity=34.8909657320872, Blast_Score=324, Evalue=2e-88, Organism=Homo sapiens, GI208022658, Length=371, Percent_Identity=38.2749326145553, Blast_Score=197, Evalue=3e-50, Organism=Caenorhabditis elegans, GI72000600, Length=602, Percent_Identity=34.7176079734219, Blast_Score=308, Evalue=6e-84, Organism=Caenorhabditis elegans, GI17568491, Length=641, Percent_Identity=32.1372854914197, Blast_Score=260, Evalue=2e-69, Organism=Drosophila melanogaster, GI24646169, Length=621, Percent_Identity=36.5539452495974, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI24582088, Length=621, Percent_Identity=35.1046698872786, Blast_Score=328, Evalue=1e-89,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR019801 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR001944 [H]
Pfam domain/function: PF01301 Glyco_hydro_35 [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 86713; Mature: 86713
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS01182 GLYCOSYL_HYDROL_F35
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSMKKKIAYLLLLLMLIPVGSFAKEKRTFEIKDGHFYVNGKVTPILSGEMHYPRIPHQY CCHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEECCEEEECCEEEEEECCCCCCCCCCHHH WRHRLRMMRAMGLNTVATYVFWNLHETEPGKWDFEGDKNLAEYIRIAGEEGLMVILRPGP HHHHHHHHHHHCCHHEEEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCC YVCAEWEFGGYPWWLQNIPGMEIRRDNPEFLKRTKLYIDKLYEQVGDLQVSKGGPIIMVQ EEEEECCCCCCCHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEE AENEFGSYVAQRKDIPLEEHRRYNAKIKRQLADAGFNVPLFTSDGSWLFEGGSTPGALPT ECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCC ANGESNVENLKKVVNEYHGGVGPYMVAEFYPGWLMHWAEPFPDISDSGIARQTETYLQND CCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCC VSFNFYMVHGGTNFGFTSGANYDKKHDIQPDLTSYDYDAPISEAGWVTPKFDSIRNVIRK CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH YVTYDVPEAPAPIPLIEIPSISLTKVADVLALAKEGEPVASPTPLTFEQLNQGYGYVLYS HHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEE THFNQPLKGRLEIPGLRDYATIYVDGERVGELNRCFNQYAMEIDIPFNATLDILVENMGR ECCCCCCCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCC INYGEEIVRNTKGIISSVKINGSEISDWKMYKLPMDRMPALVSGEPYVYKNGSPEVAALG CCCHHHHHHHHHHCEEEEEECCCCCCCEEEEECCHHHCCCEECCCCEEEECCCCCEEEEC NKPVLYEGTFHLSDTGDTFIDMEDWGKGIIFINGVNIGRYWYAGPQQTLYIPGVWLNKGE CCCEEEEEEEEECCCCCEEEEHHHCCCEEEEEEEEEECCEEECCCCCEEEECEEEEECCC NKIVIYEQLNNDRKSSVRTVKTPVLTKLKKIAAMEKKNRLMEKTVSPFSVDETMRRIEEI CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IKSQGGSVFAMFDHGRNASEVGMKLPPNKVIVFGSPKVGTLLMQQDPSISLELPLRISVW HHCCCCCEEEEEECCCCHHHCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEEE EDADGKVWVGSPNLETIASEYGMENSGVIEKMQEAVTNIVSKSIAGSR ECCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MDSMKKKIAYLLLLLMLIPVGSFAKEKRTFEIKDGHFYVNGKVTPILSGEMHYPRIPHQY CCHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEECCEEEECCEEEEEECCCCCCCCCCHHH WRHRLRMMRAMGLNTVATYVFWNLHETEPGKWDFEGDKNLAEYIRIAGEEGLMVILRPGP HHHHHHHHHHHCCHHEEEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCC YVCAEWEFGGYPWWLQNIPGMEIRRDNPEFLKRTKLYIDKLYEQVGDLQVSKGGPIIMVQ EEEEECCCCCCCHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEE AENEFGSYVAQRKDIPLEEHRRYNAKIKRQLADAGFNVPLFTSDGSWLFEGGSTPGALPT ECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCC ANGESNVENLKKVVNEYHGGVGPYMVAEFYPGWLMHWAEPFPDISDSGIARQTETYLQND CCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCC VSFNFYMVHGGTNFGFTSGANYDKKHDIQPDLTSYDYDAPISEAGWVTPKFDSIRNVIRK CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH YVTYDVPEAPAPIPLIEIPSISLTKVADVLALAKEGEPVASPTPLTFEQLNQGYGYVLYS HHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEE THFNQPLKGRLEIPGLRDYATIYVDGERVGELNRCFNQYAMEIDIPFNATLDILVENMGR ECCCCCCCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCC INYGEEIVRNTKGIISSVKINGSEISDWKMYKLPMDRMPALVSGEPYVYKNGSPEVAALG CCCHHHHHHHHHHCEEEEEECCCCCCCEEEEECCHHHCCCEECCCCEEEECCCCCEEEEC NKPVLYEGTFHLSDTGDTFIDMEDWGKGIIFINGVNIGRYWYAGPQQTLYIPGVWLNKGE CCCEEEEEEEEECCCCCEEEEHHHCCCEEEEEEEEEECCEEECCCCCEEEECEEEEECCC NKIVIYEQLNNDRKSSVRTVKTPVLTKLKKIAAMEKKNRLMEKTVSPFSVDETMRRIEEI CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IKSQGGSVFAMFDHGRNASEVGMKLPPNKVIVFGSPKVGTLLMQQDPSISLELPLRISVW HHCCCCCEEEEEECCCCHHHCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEEE EDADGKVWVGSPNLETIASEYGMENSGVIEKMQEAVTNIVSKSIAGSR ECCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8563148 [H]