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The map label for this gene is ydcP [H]

Identifier: 150008124

GI number: 150008124

Start: 1737809

End: 1739653

Strand: Reverse

Name: ydcP [H]

Synonym: BDI_1489

Alternate gene names: 150008124

Gene position: 1739653-1737809 (Counterclockwise)

Preceding gene: 150008125

Following gene: 150008123

Centisome position: 36.16

GC content: 53.82

Gene sequence:

>1845_bases
ATGAGAAAAGAACCCCGTTCGATAGAACTGTTATCTCCCGCTAAGGATCTGATTTGCGGCAGGGAGGCGATTAACCATGG
TGCCGATGCCGTGTATATCGGTGCCCCGAAGTTCGGAGCCCGTGCCGCTGCCGGTAATACGCTGGACGATATACGGCAGC
TTTGCGATTACGCCCATCTCTATTCGGCTCGTATTTACGTGGCCTTGAACACTATCTTGAAAGAAGAGGAGCTGGCAGAG
GCCGAGCAAATGATCTGGCAGCTTTACGAGGCCGGGGCAGATGCCTTGATCGTTCAAGACATGGGTATCACCCAGTTGAA
CCTTCCGCCCATCCCCTTGCACGCCAGTACGCAAACGGATAACCGTACGCCGGAGAAGGTGAGATTCCTGCAAGAGGCAG
GTTTCACGCAAGTCGTATTGGCGAGAGAGCTATCACTGAACCAGATACGGGAGATCGCCGAGCGAACGACCGTGCCTCTG
GAGGTCTTCGTGCACGGGGCGCTGTGCGTAAGCTATAGCGGCCAGTGTTACCTGAGCGCCGCCTTGAGCGGACGAAGCGC
CAACCGGGGGGAATGCGCCCAGTATTGCCGCCTGCCTTATAGCTTGATCGATGCGGATGGGAAGGAGATCGTATCGGGTA
AACATCTCCTATCCTTGAAAGATATGAACCGAGGGGAATACTTAGAGGAGCTGTTGGATGCCGGTGTCTCTTCCTTGAAG
ATCGAGGGTCGTTTGAAGGATGTATCTTACGTGAAAAACGTAACGGCTTGGTATCGGAAGAAACTGGACGCTATCTTGGC
TCGTCGGCCGGAATACCGTCGTGCCTCGGCCGGGCATAGCACTTACACATTCCAGCCTGTGGCGGAGAAAAGCTTCAACC
GGGGTTTCACGCCTTTCTTATGGAAGGAGCGCACGAAGGATATCACCAGCTTTGATACGCCTAAGTCCTTGGGTGAACCG
GTGGGTACGGTGAAGGAACTGAAAGGAAACTCTTTCACGATCGCCGGACTGAAACAATTGAATAACGGAGACGGGCTTAC
CTTCTTCAACGAGAAAGGGGAGTTGGAGGGTTTCCGGGTAAACCGTGTGGAGGCGAACCGAATCTTTACGCTGGATCGCC
CGGCGATCCGTCCGAAGATGCCTTTGTACCGGAATTTCGATCAAGAGTTTGATAAACTGCTATCCAAGCCATCCGCCGAG
CGGAAACTCTCTGTCCGGATGGAATTTCAAGATAACGCCTTTGGCTTCACGTTAAGTATGGCGGACGAGACAGGAGCCCG
TATCATGCTCACCAAGCCGTTCGAGAAAGAACCGGCCCGGAGGGAGCAGGCGGAGAATATCCGTACCCAGCTCTCTAAGT
TGGGGAACACGCCTTTCGAGGCGGAGGAAGTTGCCGTGGCGATGTCCGATAACTGGTTTGTCCCTTCTTCTTTATTGGCC
GAGATGCGTAGGCTAGGGGTGGAGAGGCTTATCTCTACCCGGCGGATTCGTTACCGCAGGGAAGAGGCTCGTCCGTTTAA
GCCGTGTGTAGGCGAGACTCCGGAAGCCCCTTTCCCCGAGAAGTGTCTGACCTATTTAGGGAATGTATCCAATAGCAAGG
CTGGTGCCTTTTATAAGGCGCATGGCGTGACTGCCGTGGAAGACGCTTTCGAGTTGTCTCCCCGGAAGGATGTCCCTTTG
ATGTTCACGAAACATTGCCTGCGGTACAGTATGGGATGGTGCCCTACTTACCAGAAGCAGAAGTCTCCCTATAAGGAGCC
TTACTTCCTGCGCTATAAGGAAACGCTCTTGCGTTTGCGCTTCGACTGCAAGAATTGCCAGATGTTGATCTATGCGGAGG
AATAA

Upstream 100 bases:

>100_bases
GGGGCACGCGAACCTGCTGTTCACCAATTGGCTGAACTACTACGTATACCAAGAGACCCCGTTCCGCCGGGAAGATATTA
AAAAACTAGGAAGCTTGTAA

Downstream 100 bases:

>100_bases
CGGGCTTTGTAACTACTTAATCCGATAAATAAAACAGGTATGAAACGACAAATTTTCTCGCTGTTCCTGCTCTTGCTCAC
GTTGGTAGCTTGTGGGGATA

Product: putative collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MRKEPRSIELLSPAKDLICGREAINHGADAVYIGAPKFGARAAAGNTLDDIRQLCDYAHLYSARIYVALNTILKEEELAE
AEQMIWQLYEAGADALIVQDMGITQLNLPPIPLHASTQTDNRTPEKVRFLQEAGFTQVVLARELSLNQIREIAERTTVPL
EVFVHGALCVSYSGQCYLSAALSGRSANRGECAQYCRLPYSLIDADGKEIVSGKHLLSLKDMNRGEYLEELLDAGVSSLK
IEGRLKDVSYVKNVTAWYRKKLDAILARRPEYRRASAGHSTYTFQPVAEKSFNRGFTPFLWKERTKDITSFDTPKSLGEP
VGTVKELKGNSFTIAGLKQLNNGDGLTFFNEKGELEGFRVNRVEANRIFTLDRPAIRPKMPLYRNFDQEFDKLLSKPSAE
RKLSVRMEFQDNAFGFTLSMADETGARIMLTKPFEKEPARREQAENIRTQLSKLGNTPFEAEEVAVAMSDNWFVPSSLLA
EMRRLGVERLISTRRIRYRREEARPFKPCVGETPEAPFPEKCLTYLGNVSNSKAGAFYKAHGVTAVEDAFELSPRKDVPL
MFTKHCLRYSMGWCPTYQKQKSPYKEPYFLRYKETLLRLRFDCKNCQMLIYAEE

Sequences:

>Translated_614_residues
MRKEPRSIELLSPAKDLICGREAINHGADAVYIGAPKFGARAAAGNTLDDIRQLCDYAHLYSARIYVALNTILKEEELAE
AEQMIWQLYEAGADALIVQDMGITQLNLPPIPLHASTQTDNRTPEKVRFLQEAGFTQVVLARELSLNQIREIAERTTVPL
EVFVHGALCVSYSGQCYLSAALSGRSANRGECAQYCRLPYSLIDADGKEIVSGKHLLSLKDMNRGEYLEELLDAGVSSLK
IEGRLKDVSYVKNVTAWYRKKLDAILARRPEYRRASAGHSTYTFQPVAEKSFNRGFTPFLWKERTKDITSFDTPKSLGEP
VGTVKELKGNSFTIAGLKQLNNGDGLTFFNEKGELEGFRVNRVEANRIFTLDRPAIRPKMPLYRNFDQEFDKLLSKPSAE
RKLSVRMEFQDNAFGFTLSMADETGARIMLTKPFEKEPARREQAENIRTQLSKLGNTPFEAEEVAVAMSDNWFVPSSLLA
EMRRLGVERLISTRRIRYRREEARPFKPCVGETPEAPFPEKCLTYLGNVSNSKAGAFYKAHGVTAVEDAFELSPRKDVPL
MFTKHCLRYSMGWCPTYQKQKSPYKEPYFLRYKETLLRLRFDCKNCQMLIYAEE
>Mature_614_residues
MRKEPRSIELLSPAKDLICGREAINHGADAVYIGAPKFGARAAAGNTLDDIRQLCDYAHLYSARIYVALNTILKEEELAE
AEQMIWQLYEAGADALIVQDMGITQLNLPPIPLHASTQTDNRTPEKVRFLQEAGFTQVVLARELSLNQIREIAERTTVPL
EVFVHGALCVSYSGQCYLSAALSGRSANRGECAQYCRLPYSLIDADGKEIVSGKHLLSLKDMNRGEYLEELLDAGVSSLK
IEGRLKDVSYVKNVTAWYRKKLDAILARRPEYRRASAGHSTYTFQPVAEKSFNRGFTPFLWKERTKDITSFDTPKSLGEP
VGTVKELKGNSFTIAGLKQLNNGDGLTFFNEKGELEGFRVNRVEANRIFTLDRPAIRPKMPLYRNFDQEFDKLLSKPSAE
RKLSVRMEFQDNAFGFTLSMADETGARIMLTKPFEKEPARREQAENIRTQLSKLGNTPFEAEEVAVAMSDNWFVPSSLLA
EMRRLGVERLISTRRIRYRREEARPFKPCVGETPEAPFPEKCLTYLGNVSNSKAGAFYKAHGVTAVEDAFELSPRKDVPL
MFTKHCLRYSMGWCPTYQKQKSPYKEPYFLRYKETLLRLRFDCKNCQMLIYAEE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=624, Percent_Identity=45.3525641025641, Blast_Score=530, Evalue=1e-151,
Organism=Escherichia coli, GI1788397, Length=408, Percent_Identity=28.921568627451, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=32.0819112627986, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 69692; Mature: 69692

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEPRSIELLSPAKDLICGREAINHGADAVYIGAPKFGARAAAGNTLDDIRQLCDYAHL
CCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
YSARIYVALNTILKEEELAEAEQMIWQLYEAGADALIVQDMGITQLNLPPIPLHASTQTD
HHHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCCC
NRTPEKVRFLQEAGFTQVVLARELSLNQIREIAERTTVPLEVFVHGALCVSYSGQCYLSA
CCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHEEEEEEEEECCCEEEEE
ALSGRSANRGECAQYCRLPYSLIDADGKEIVSGKHLLSLKDMNRGEYLEELLDAGVSSLK
ECCCCCCCCHHHHHHHCCCHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEE
IEGRLKDVSYVKNVTAWYRKKLDAILARRPEYRRASAGHSTYTFQPVAEKSFNRGFTPFL
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECHHHHHHCCCCCCCHH
WKERTKDITSFDTPKSLGEPVGTVKELKGNSFTIAGLKQLNNGDGLTFFNEKGELEGFRV
HHHHCCCCCCCCCCHHHCCCHHHHHHHCCCEEEEEEHHHCCCCCCEEEECCCCCCCCEEE
NRVEANRIFTLDRPAIRPKMPLYRNFDQEFDKLLSKPSAERKLSVRMEFQDNAFGFTLSM
EEEECCEEEEECCCCCCCCCCHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEE
ADETGARIMLTKPFEKEPARREQAENIRTQLSKLGNTPFEAEEVAVAMSDNWFVPSSLLA
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHHHHHH
EMRRLGVERLISTRRIRYRREEARPFKPCVGETPEAPFPEKCLTYLGNVSNSKAGAFYKA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE
HGVTAVEDAFELSPRKDVPLMFTKHCLRYSMGWCPTYQKQKSPYKEPYFLRYKETLLRLR
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
FDCKNCQMLIYAEE
CCCCCCEEEEEECC
>Mature Secondary Structure
MRKEPRSIELLSPAKDLICGREAINHGADAVYIGAPKFGARAAAGNTLDDIRQLCDYAHL
CCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
YSARIYVALNTILKEEELAEAEQMIWQLYEAGADALIVQDMGITQLNLPPIPLHASTQTD
HHHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCCC
NRTPEKVRFLQEAGFTQVVLARELSLNQIREIAERTTVPLEVFVHGALCVSYSGQCYLSA
CCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHEEEEEEEEECCCEEEEE
ALSGRSANRGECAQYCRLPYSLIDADGKEIVSGKHLLSLKDMNRGEYLEELLDAGVSSLK
ECCCCCCCCHHHHHHHCCCHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEE
IEGRLKDVSYVKNVTAWYRKKLDAILARRPEYRRASAGHSTYTFQPVAEKSFNRGFTPFL
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECHHHHHHCCCCCCCHH
WKERTKDITSFDTPKSLGEPVGTVKELKGNSFTIAGLKQLNNGDGLTFFNEKGELEGFRV
HHHHCCCCCCCCCCHHHCCCHHHHHHHCCCEEEEEEHHHCCCCCCEEEECCCCCCCCEEE
NRVEANRIFTLDRPAIRPKMPLYRNFDQEFDKLLSKPSAERKLSVRMEFQDNAFGFTLSM
EEEECCEEEEECCCCCCCCCCHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEE
ADETGARIMLTKPFEKEPARREQAENIRTQLSKLGNTPFEAEEVAVAMSDNWFVPSSLLA
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHHHHHH
EMRRLGVERLISTRRIRYRREEARPFKPCVGETPEAPFPEKCLTYLGNVSNSKAGAFYKA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE
HGVTAVEDAFELSPRKDVPLMFTKHCLRYSMGWCPTYQKQKSPYKEPYFLRYKETLLRLR
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
FDCKNCQMLIYAEE
CCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]