| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
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The map label for this gene is pheT [H]
Identifier: 150005970
GI number: 150005970
Start: 4319890
End: 4322352
Strand: Direct
Name: pheT [H]
Synonym: BVU_3468
Alternate gene names: 150005970
Gene position: 4319890-4322352 (Clockwise)
Preceding gene: 150005969
Following gene: 150005971
Centisome position: 83.67
GC content: 43.77
Gene sequence:
>2463_bases ATGAATATCTCTTATAATTGGCTGAAAGAATACGTCAACTTCGATTTGACACCGGATGAAGTGGCCGAAGCGCTGACTTC CATCGGTTTGGAAACCGGAGGCGTAGAAGAAGTCCAAACAATTAAAGGTGGTCTGGAAGGTATTGTCATCGGCGAAGTGC TGACTTGCGAACCTCATCCCAATTCAGACCACATGCATGTTACTACTGTGAATTTGGGACAAGGCGAACCGGTACAGATT GTCTGTGGAGCCGCTAACGTAGCTGCCGGACAGAAAGTGGTGGTTGCCACATTGGGCACCAAGCTATACGATGGCGAAGA ATGTTTTACCATCAAGAAATCAAAGCTCCGCGGAATTGAATCTATGGGTATGATCTGTGCCGAAGACGAAATCGGTATCG GAAACAGCCACGAAGGTATCATCGTACTGCCGGCGGATGCTGTTCCGGGTACTCCCGCTAAAGATTATTTCAATATCAAA AGCGAATACGTACTGGAAGTGGATATCACCCCGAACCGTGCGGACGCCTGCTCACATTACGGCGTGGCCCGAGATCTGTA TGCCTACCTGATTCAAAACGGCAAACAAGCCACTTTAAAACGTCCGTCTGTAGAAGCGTTTAAAGTGGATAACCATGATA TGGACATCGCCATTGAAGTAGAGAATACAGAAGCATGTCCGCGTTATGCCGGAGTTTCCATAAAAGGGGTAACTGTAAAA GAGAGTCCCGAATGGCTGCAAAACAAATTACGCCTGATTGGAGTACGTCCTATCAATAATATCGTGGATATCACCAACTA CATCCTTCACGCATACGGCCAGCCCCTGCACTGTTTTGATGCAGATAAGATTAAAGGTGGTAAGATTGTAGTGAAGACTG TTGCCGAAGGTACTACATTCGTTACTTTGGACGAAGTGGAACGCAAATTATCCGACAAGGACCTGATGATATGCAACACT GAAGAACCGATGTGCATTGCCGGCGTATTCGGTGGTCTGGATTCGGGAACAACCGAGCAGACAGTAGATGTATTTTTGGA AAGCGCTTATTTCAACCCGACTTGGGTACGTAAAACAGCCCGTCGCCATGGATTGAGTACAGACTCTTCTTTCCGTTTCG AACGTGGTATTGACCCCAACGGAACTATTTATGCATTGAAAGAAGCGGCTTTACTGGTTCAAGAACTGGCAGGAGGTACT ATTTCTTCTGAAATTAAAGACAACTACCCTGCCCCGATAGCCGATTTTACAGTAGAGCTGAATTATGAGAAAGTCCACTC ACTGATAGGAAAAACCATACCGGTGGAAACCATAAAGAGCATTGTCACCAGTCTTGAAATGAAGATTGTGAACGAAACAC CCGAAGGCTTGACTTTACAAGTTCCCCCCTATCGTGTGGATGTGCAACGTGATTGCGATGTAGTAGAAGACATTCTCCGT ATCTACGGATATAATAATGTGGAGATTCCTACTACCTTGAAATCCAGCCTGACCACCAAAGGTGAAGTGGATTACTCCCA GAAATTACAAAATCTGATTTCAGAGCAACTGGTAGGTTGTGGTTTCAATGAAATACTGAACAATTCACTGACCGCCGCTT CCTATTACGAAGGGTCGGAAACATACAAGAACGAAAATTTGGTTTACTTGATGAACCCATTGAGTAACGATTTGAACGTG ATGCGTCAAACTTTGTTATTCGGTGGTTTGGAAAGTATCCAGCACAATGCCAATCGTAAGAACGCCGATTTGAAATTCTT TGAATTCGGTAACTGCTATTTTTATAACGCAGAAAAGAAAAACCCGGAAAAAGTGCTTGCGGCTTATGCTGAAGAATATC ATTTAGGATTGTGGGTAACCGGCAAACGCGTCAGCAATTCATGGGCCCATCCCGATGAAAACAGCAGTGTTTACGAATTA AAAGCATATGTGCTGAACATCTTTACCCGTTTGGGATTGAATTTCGGCAACGTGGTATTCGGCAACCTGACCAACGATAT CTATTCAACAGCCATCAGCGTACACACACGTGGCGGCAAGTTATTGGCCACCTTCGGCATCATCAGCAAGAAGATTCAAA AAGCATTCGATATAGACAATGAGGTATATTATGCAGAAATCAACTGGAAAGAACTGATGAAAGCCATCAAGTCGGCTAAA GTCAACTTTAAAGAACTTTCCAAGTTCCCGGCTGTGAAACGTGACTTGGCTTTGTTGATTGACAAGAACATACAGTTTGC AGAAATCGAAAAAATAGCCTATGAGACTGAAAAGAAACTGCTGAAAGAAGTAGAATTGTTTGATGTTTATGAAGGCAAGA ATCTGGAACCGGGTAAAAAAAGTTATGCAGTGAGCTTCTTGTTACAGGATGAAAGCGCAACACTGAACGACAAACAGATT GACAAGATCATGTCCAAACTGATTGCTAACCTGGAAAACAAACTAGGTGCAAAACTAAGATAA
Upstream 100 bases:
>100_bases CTGTGTTAATCTGAGTAATCTGTGATGGATAAATAACAGGATAAAAGAAAATAATTACTAAATTTGCAGGTCATTTGGAA ATACATAAAAAATATCATAT
Downstream 100 bases:
>100_bases TAATAAAAATAACCATTATAAAACTACAATCCAATGGGAAGAGCATTTGAATATAGAAAAGCTACAAAGCTGAAAAGATG GGGCCACATGGCCAAAACAT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MNISYNWLKEYVNFDLTPDEVAEALTSIGLETGGVEEVQTIKGGLEGIVIGEVLTCEPHPNSDHMHVTTVNLGQGEPVQI VCGAANVAAGQKVVVATLGTKLYDGEECFTIKKSKLRGIESMGMICAEDEIGIGNSHEGIIVLPADAVPGTPAKDYFNIK SEYVLEVDITPNRADACSHYGVARDLYAYLIQNGKQATLKRPSVEAFKVDNHDMDIAIEVENTEACPRYAGVSIKGVTVK ESPEWLQNKLRLIGVRPINNIVDITNYILHAYGQPLHCFDADKIKGGKIVVKTVAEGTTFVTLDEVERKLSDKDLMICNT EEPMCIAGVFGGLDSGTTEQTVDVFLESAYFNPTWVRKTARRHGLSTDSSFRFERGIDPNGTIYALKEAALLVQELAGGT ISSEIKDNYPAPIADFTVELNYEKVHSLIGKTIPVETIKSIVTSLEMKIVNETPEGLTLQVPPYRVDVQRDCDVVEDILR IYGYNNVEIPTTLKSSLTTKGEVDYSQKLQNLISEQLVGCGFNEILNNSLTAASYYEGSETYKNENLVYLMNPLSNDLNV MRQTLLFGGLESIQHNANRKNADLKFFEFGNCYFYNAEKKNPEKVLAAYAEEYHLGLWVTGKRVSNSWAHPDENSSVYEL KAYVLNIFTRLGLNFGNVVFGNLTNDIYSTAISVHTRGGKLLATFGIISKKIQKAFDIDNEVYYAEINWKELMKAIKSAK VNFKELSKFPAVKRDLALLIDKNIQFAEIEKIAYETEKKLLKEVELFDVYEGKNLEPGKKSYAVSFLLQDESATLNDKQI DKIMSKLIANLENKLGAKLR
Sequences:
>Translated_820_residues MNISYNWLKEYVNFDLTPDEVAEALTSIGLETGGVEEVQTIKGGLEGIVIGEVLTCEPHPNSDHMHVTTVNLGQGEPVQI VCGAANVAAGQKVVVATLGTKLYDGEECFTIKKSKLRGIESMGMICAEDEIGIGNSHEGIIVLPADAVPGTPAKDYFNIK SEYVLEVDITPNRADACSHYGVARDLYAYLIQNGKQATLKRPSVEAFKVDNHDMDIAIEVENTEACPRYAGVSIKGVTVK ESPEWLQNKLRLIGVRPINNIVDITNYILHAYGQPLHCFDADKIKGGKIVVKTVAEGTTFVTLDEVERKLSDKDLMICNT EEPMCIAGVFGGLDSGTTEQTVDVFLESAYFNPTWVRKTARRHGLSTDSSFRFERGIDPNGTIYALKEAALLVQELAGGT ISSEIKDNYPAPIADFTVELNYEKVHSLIGKTIPVETIKSIVTSLEMKIVNETPEGLTLQVPPYRVDVQRDCDVVEDILR IYGYNNVEIPTTLKSSLTTKGEVDYSQKLQNLISEQLVGCGFNEILNNSLTAASYYEGSETYKNENLVYLMNPLSNDLNV MRQTLLFGGLESIQHNANRKNADLKFFEFGNCYFYNAEKKNPEKVLAAYAEEYHLGLWVTGKRVSNSWAHPDENSSVYEL KAYVLNIFTRLGLNFGNVVFGNLTNDIYSTAISVHTRGGKLLATFGIISKKIQKAFDIDNEVYYAEINWKELMKAIKSAK VNFKELSKFPAVKRDLALLIDKNIQFAEIEKIAYETEKKLLKEVELFDVYEGKNLEPGKKSYAVSFLLQDESATLNDKQI DKIMSKLIANLENKLGAKLR >Mature_820_residues MNISYNWLKEYVNFDLTPDEVAEALTSIGLETGGVEEVQTIKGGLEGIVIGEVLTCEPHPNSDHMHVTTVNLGQGEPVQI VCGAANVAAGQKVVVATLGTKLYDGEECFTIKKSKLRGIESMGMICAEDEIGIGNSHEGIIVLPADAVPGTPAKDYFNIK SEYVLEVDITPNRADACSHYGVARDLYAYLIQNGKQATLKRPSVEAFKVDNHDMDIAIEVENTEACPRYAGVSIKGVTVK ESPEWLQNKLRLIGVRPINNIVDITNYILHAYGQPLHCFDADKIKGGKIVVKTVAEGTTFVTLDEVERKLSDKDLMICNT EEPMCIAGVFGGLDSGTTEQTVDVFLESAYFNPTWVRKTARRHGLSTDSSFRFERGIDPNGTIYALKEAALLVQELAGGT ISSEIKDNYPAPIADFTVELNYEKVHSLIGKTIPVETIKSIVTSLEMKIVNETPEGLTLQVPPYRVDVQRDCDVVEDILR IYGYNNVEIPTTLKSSLTTKGEVDYSQKLQNLISEQLVGCGFNEILNNSLTAASYYEGSETYKNENLVYLMNPLSNDLNV MRQTLLFGGLESIQHNANRKNADLKFFEFGNCYFYNAEKKNPEKVLAAYAEEYHLGLWVTGKRVSNSWAHPDENSSVYEL KAYVLNIFTRLGLNFGNVVFGNLTNDIYSTAISVHTRGGKLLATFGIISKKIQKAFDIDNEVYYAEINWKELMKAIKSAK VNFKELSKFPAVKRDLALLIDKNIQFAEIEKIAYETEKKLLKEVELFDVYEGKNLEPGKKSYAVSFLLQDESATLNDKQI DKIMSKLIANLENKLGAKLR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=828, Percent_Identity=33.8164251207729, Blast_Score=427, Evalue=1e-120,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 91162; Mature: 91162
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNISYNWLKEYVNFDLTPDEVAEALTSIGLETGGVEEVQTIKGGLEGIVIGEVLTCEPHP CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCC NSDHMHVTTVNLGQGEPVQIVCGAANVAAGQKVVVATLGTKLYDGEECFTIKKSKLRGIE CCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCEEECCCCEEEEEHHHHCCHH SMGMICAEDEIGIGNSHEGIIVLPADAVPGTPAKDYFNIKSEYVLEVDITPNRADACSHY HHCCEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCEEEEEEEECCCCHHHHHHC GVARDLYAYLIQNGKQATLKRPSVEAFKVDNHDMDIAIEVENTEACPRYAGVSIKGVTVK CHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEC ESPEWLQNKLRLIGVRPINNIVDITNYILHAYGQPLHCFDADKIKGGKIVVKTVAEGTTF CCHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEE VTLDEVERKLSDKDLMICNTEEPMCIAGVFGGLDSGTTEQTVDVFLESAYFNPTWVRKTA EEHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH RRHGLSTDSSFRFERGIDPNGTIYALKEAALLVQELAGGTISSEIKDNYPAPIADFTVEL HHCCCCCCCCCCEECCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEE NYEKVHSLIGKTIPVETIKSIVTSLEMKIVNETPEGLTLQVPPYRVDVQRDCDVVEDILR CHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCCCEEECCCEEECCCCCHHHHHHHHH IYGYNNVEIPTTLKSSLTTKGEVDYSQKLQNLISEQLVGCGFNEILNNSLTAASYYEGSE HHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCH TYKNENLVYLMNPLSNDLNVMRQTLLFGGLESIQHNANRKNADLKFFEFGNCYFYNAEKK HCCCCCEEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEEECCEEEECCCCC NPEKVLAAYAEEYHLGLWVTGKRVSNSWAHPDENSSVYELKAYVLNIFTRLGLNFGNVVF CHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE GNLTNDIYSTAISVHTRGGKLLATFGIISKKIQKAFDIDNEVYYAEINWKELMKAIKSAK ECCHHHHHHHEEEEEECCCEEEEHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCC VNFKELSKFPAVKRDLALLIDKNIQFAEIEKIAYETEKKLLKEVELFDVYEGKNLEPGKK CCHHHHHHCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC SYAVSFLLQDESATLNDKQIDKIMSKLIANLENKLGAKLR CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNISYNWLKEYVNFDLTPDEVAEALTSIGLETGGVEEVQTIKGGLEGIVIGEVLTCEPHP CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCC NSDHMHVTTVNLGQGEPVQIVCGAANVAAGQKVVVATLGTKLYDGEECFTIKKSKLRGIE CCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCEEECCCCEEEEEHHHHCCHH SMGMICAEDEIGIGNSHEGIIVLPADAVPGTPAKDYFNIKSEYVLEVDITPNRADACSHY HHCCEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCEEEEEEEECCCCHHHHHHC GVARDLYAYLIQNGKQATLKRPSVEAFKVDNHDMDIAIEVENTEACPRYAGVSIKGVTVK CHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEC ESPEWLQNKLRLIGVRPINNIVDITNYILHAYGQPLHCFDADKIKGGKIVVKTVAEGTTF CCHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEE VTLDEVERKLSDKDLMICNTEEPMCIAGVFGGLDSGTTEQTVDVFLESAYFNPTWVRKTA EEHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH RRHGLSTDSSFRFERGIDPNGTIYALKEAALLVQELAGGTISSEIKDNYPAPIADFTVEL HHCCCCCCCCCCEECCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEE NYEKVHSLIGKTIPVETIKSIVTSLEMKIVNETPEGLTLQVPPYRVDVQRDCDVVEDILR CHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCCCEEECCCEEECCCCCHHHHHHHHH IYGYNNVEIPTTLKSSLTTKGEVDYSQKLQNLISEQLVGCGFNEILNNSLTAASYYEGSE HHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCH TYKNENLVYLMNPLSNDLNVMRQTLLFGGLESIQHNANRKNADLKFFEFGNCYFYNAEKK HCCCCCEEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEEECCEEEECCCCC NPEKVLAAYAEEYHLGLWVTGKRVSNSWAHPDENSSVYELKAYVLNIFTRLGLNFGNVVF CHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE GNLTNDIYSTAISVHTRGGKLLATFGIISKKIQKAFDIDNEVYYAEINWKELMKAIKSAK ECCHHHHHHHEEEEEECCCEEEEHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCC VNFKELSKFPAVKRDLALLIDKNIQFAEIEKIAYETEKKLLKEVELFDVYEGKNLEPGKK CCHHHHHHCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC SYAVSFLLQDESATLNDKQIDKIMSKLIANLENKLGAKLR CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA