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The map label for this gene is xerD [C]

Identifier: 150005630

GI number: 150005630

Start: 3943366

End: 3944580

Strand: Direct

Name: xerD [C]

Synonym: BVU_3119

Alternate gene names: 150005630

Gene position: 3943366-3944580 (Clockwise)

Preceding gene: 150005629

Following gene: 150005631

Centisome position: 76.37

GC content: 38.35

Gene sequence:

>1215_bases
ATGAATGCCTGTGTTTCAGTAGTTTGCTACAAATCTAAGACATTATCCAATGGTGAAAATCCATTGATGCTCCAAGTATC
TAAAGGAGGAAAGCGTAAATACCAAAGTTTAGGCATATCCATCAATCCTAAATATTGGGACTTCACACGAAACAAACCTA
AGCCTAACTGCCCTAATAAAGAATATATCCAAAAGATTATCTTGGATAAACAAAGGGAGCTACAACAACGCATGTTGGAA
CTAAACAGCGAACAAAAAGAATACACTACCACCACTTTACTCAATAATGAGAATACAAAGTTTGAGCTAAAAACAGTCAG
TATGTTCTACAAGGAACTTATAGAGCAATACACACGGGAGGATAAATGTGGAAACCGTCTTATCTATAAAGGCTCATTCA
ATTCACTCAAAGTTTTCACTAATGGGAAATTGGATATTCCATTTAATGAAATAGATATTGCTTGGCTTAACAAGTATGAG
AAGTGGCTACGCTCCAAAGGTAATAGAGAAACTACAATCAGCCTACTTTTTCGCACGCTCCGTAGTGCATACAATAAAGC
TATCAAAGCAAAGTGTGCCCGAAAGTCCGATTATCCGTTTGATGATTACAAGATTAACAAATTCGATACCACTACCCAAA
AGAGAGCCATTGCCAAAACAGACGTGCTGAAATTCACAACAGAAGTGCAGCCCATCGGAAAGCAACAATATATGGAGTTA
AGCAAAGACATATTCGTGTTCAGCTATCTATGCGGTGGAATCAATTTCACAGACATAGCTAATCTGACAAACGAGAATAT
CCAAAATGGCAGGCTACACTATATTCGTCAAAAGACAAAAAAGCCAATCAAGATAGGAATACCGCAAGAAGCCATGCAGA
TAATCGAAAAATATTCAAAGGAGAGCAAAGGCTATCTATTTCCGATTTTAGATAGCAAGATACACAAGACCGCCCTACAA
AAGCAGAACAGAATACATAAGATATTAGGAAAGGTCAATAAGAATCTAAAACTACTTGCCGCACAGCTTGGAGTTGAAGC
CAACTTGACAACCTATGTCGCCCGGCACTCATTCGCAAGCGTCCTAAAGAAATCGGGAGTAAACATCGCATTGATAAGTG
AAGCATTGGGACATTCAGACTTAGCCACCACTCAAATATACTTGGATAGTTTCGATAATGAGCAAGTGGATGAAGCCATG
AGGAATCTCCTTTAA

Upstream 100 bases:

>100_bases
TAGCTATCGAGGTTTTCTGCTTTTAGCAGGTTACGGAAAGTCTATTTTCGGGTGGTTTCAGAGGGTGCATGTAAACCAAG
ATGTAAACCGAAAATTCATT

Downstream 100 bases:

>100_bases
TCTATAAATAAATCCCATTTGCAGCAATGCAGGTGGGATTTTCTTTATATTTTTGCAAAAAAAGGACAAAATGAGAAATA
TTGATTTTAATAAATACCAA

Product: integrase

Products: NA

Alternate protein names: Transposase; Tyrosine Type Site-Specific Recombinase; Tyrosine Site-Specific Recombinase; Integrase Family Protein; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase; Bacteriophage Integrase; Site-Specific Recombinase IntIA; Integrase/Transposase; Recombinase/Integrase; LOW QUALITY PROTEIN Tyrosine Recombinase; Integrase/Site-Specific Recombinase; Phage Integrase

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MNACVSVVCYKSKTLSNGENPLMLQVSKGGKRKYQSLGISINPKYWDFTRNKPKPNCPNKEYIQKIILDKQRELQQRMLE
LNSEQKEYTTTTLLNNENTKFELKTVSMFYKELIEQYTREDKCGNRLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYE
KWLRSKGNRETTISLLFRTLRSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKFTTEVQPIGKQQYMEL
SKDIFVFSYLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPIKIGIPQEAMQIIEKYSKESKGYLFPILDSKIHKTALQ
KQNRIHKILGKVNKNLKLLAAQLGVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAM
RNLL

Sequences:

>Translated_404_residues
MNACVSVVCYKSKTLSNGENPLMLQVSKGGKRKYQSLGISINPKYWDFTRNKPKPNCPNKEYIQKIILDKQRELQQRMLE
LNSEQKEYTTTTLLNNENTKFELKTVSMFYKELIEQYTREDKCGNRLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYE
KWLRSKGNRETTISLLFRTLRSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKFTTEVQPIGKQQYMEL
SKDIFVFSYLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPIKIGIPQEAMQIIEKYSKESKGYLFPILDSKIHKTALQ
KQNRIHKILGKVNKNLKLLAAQLGVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAM
RNLL
>Mature_404_residues
MNACVSVVCYKSKTLSNGENPLMLQVSKGGKRKYQSLGISINPKYWDFTRNKPKPNCPNKEYIQKIILDKQRELQQRMLE
LNSEQKEYTTTTLLNNENTKFELKTVSMFYKELIEQYTREDKCGNRLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYE
KWLRSKGNRETTISLLFRTLRSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKFTTEVQPIGKQQYMEL
SKDIFVFSYLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPIKIGIPQEAMQIIEKYSKESKGYLFPILDSKIHKTALQ
KQNRIHKILGKVNKNLKLLAAQLGVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAM
RNLL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46645; Mature: 46645

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNACVSVVCYKSKTLSNGENPLMLQVSKGGKRKYQSLGISINPKYWDFTRNKPKPNCPNK
CCCCEEEEEECCHHCCCCCCCEEEEECCCCCHHHHHCCCEECCCEECCCCCCCCCCCCCH
EYIQKIILDKQRELQQRMLELNSEQKEYTTTTLLNNENTKFELKTVSMFYKELIEQYTRE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCCEEEHHHHHHHHHHHHHHHHHH
DKCGNRLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYEKWLRSKGNRETTISLLFRTL
CCCCCEEEEECCCCEEEEEECCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKFTTEVQPIGKQQYMEL
HHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
SKDIFVFSYLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPIKIGIPQEAMQIIEKYSK
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
ESKGYLFPILDSKIHKTALQKQNRIHKILGKVNKNLKLLAAQLGVEANLTTYVARHSFAS
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
VLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMRNLL
HHHHCCCCEEEEHHHHCCCCHHEHEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MNACVSVVCYKSKTLSNGENPLMLQVSKGGKRKYQSLGISINPKYWDFTRNKPKPNCPNK
CCCCEEEEEECCHHCCCCCCCEEEEECCCCCHHHHHCCCEECCCEECCCCCCCCCCCCCH
EYIQKIILDKQRELQQRMLELNSEQKEYTTTTLLNNENTKFELKTVSMFYKELIEQYTRE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCCEEEHHHHHHHHHHHHHHHHHH
DKCGNRLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYEKWLRSKGNRETTISLLFRTL
CCCCCEEEEECCCCEEEEEECCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKFTTEVQPIGKQQYMEL
HHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
SKDIFVFSYLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPIKIGIPQEAMQIIEKYSK
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
ESKGYLFPILDSKIHKTALQKQNRIHKILGKVNKNLKLLAAQLGVEANLTTYVARHSFAS
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
VLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMRNLL
HHHHCCCCEEEEHHHHCCCCHHEHEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA