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The map label for this gene is rho [H]

Identifier: 150005450

GI number: 150005450

Start: 3726114

End: 3728123

Strand: Reverse

Name: rho [H]

Synonym: BVU_2933

Alternate gene names: 150005450

Gene position: 3728123-3726114 (Counterclockwise)

Preceding gene: 150005475

Following gene: 150005449

Centisome position: 72.21

GC content: 46.72

Gene sequence:

>2010_bases
ATGTATAACATTATTCAATTAAACGACAAAGACTTGTCGGAATTACAATCGATTGCCAAAGAGTTGGGTATCAAGAAAAC
AGACTCTCTAAAAAAAGAAGATCTGGTTTATAAAATTCTGGACGAGCAAGCCATAGTCGGAGCAACCCAAAAAGTAGCGG
CAGAAAAAGCCAATGAAAGTCAACCCCGTAAAAGATCACGTATCAACGTTAAAAAAGACGGTGACAAGGTCTATACTGCA
ACCAAGGACAAGGCACAGAAACTGGAAGCCAATACCCCGCAGCCTGCCGCCGCAGCTGCCGAAACAGTAAAAGAGACTGC
TCCTGTAGCGGTAACACCACAAACAGAAGCCGTGGCCGAAACAAGCGCGGAAGAAAAAACACCTAAAAAAAGAGGACGCA
AACCGGGTAGTAAGAAAGTAACAGCCAAGACAGAAGAACAACCTGCAACGAAAACGAAAGAAACTGCAAAAGAGGAAGTG
AAAGCTGAAGCACCGGCGAAACCGACACCCAAAAAAGCAAAAAAAGAAGAAACACCGGCTATTCCCGAAGAAAAAGAAGT
GATTCTTCCCGAACTGGAATTCGGCAGTGAAACCGATGATTTTATTCCCATCGAGGATCTTCCTTCAGAAAAAATAGAAC
TTCCTACTGAGTTGTTCGGCAAATTTGAGGCTACCAAAGTAGAAACACCGGCTCCGGTACAGACACCTGCCCCCAAATTC
CAACCACGCCAGCAGCGCGATCAAAATCAGAAGTACAACAATCCGCGCAACAATAATTACAACAATCCTCGTCAGGCAAA
CAATAATAACAATACGACGGCTGAGGGAGAAGCGTCTGCCAGCATTCCTCAACAACCGGAACGCAAACAGGTGGAAAAGC
CTTACGAATTTGAAGGTATCCTGACCGGTACCGGGGTATTGGAAATCATGCCCGACGGATACGGTTTCCTCCGTTCATCC
GATTACAACTATCTTTCCTCACCCGATGATATTTACGTTTCACAATCGCAAATAAAACTGTTCGGTTTGAAGACCGGTGA
TGTAGTGGAAGGCTCTATCCGTCCGCCCAAAGAAGGAGAAAAATATTTCCCGTTGGTAAAGGTGGAAAAGATAAACGGTC
TGGATCCCGGATTGGTACGTGACCGCGTTCCGTTTGATCACCTGACCCCGCTGTTCCCCGATGAAAAGTTCAAACTTTGC
AAAGGGGGATATAGTGATAACCTTTCAGCCCGTGTGGTAGATATGTTCTCACCTATCGGTAAAGGACAGCGTGCTTTGAT
TGTGGCGCAACCCAAAACCGGTAAGACGATCCTGATGAAAGACATCGCTAACGCAATCGCAGCCAACCATCCGGAAACGT
ACATGATCATGCTGCTTATTGACGAACGTCCCGAAGAAGTGACAGATATGGCGCGCAGCGTAAATGCCGAAGTGATCGCT
TCTACATTTGACGAACCGGCAGAACGTCACGTAAAGATTGCAGGTATCGTACTGGAAAAAGCGAAACGCATGGTAGAATG
CGGTCACGATGTGGTAATCTTCCTCGACTCTATCACCCGACTGGCACGTGCATACAATACCGTCTCTCCCGCTTCCGGCA
AAGTATTGTCCGGTGGTGTGGATGCAAATGCCCTGCATAAGCCCAAACGTTTCTTCGGTGCTGCCCGTAACATTGAAAAC
GGTGGCTCGCTGACCATTATCGCAACCGCACTGATTGACACCGGTTCCAAGATGGATGAAGTAATCTTCGAAGAATTCAA
GGGTACAGGTAACATGGAACTCCAGCTGGACCGCAACTTGAGCAACAAACGTATCTTCCCGGCAGTAAACATCGTGGCAT
CAAGCACCCGCCGCGACGACTTGCTGCTCGACAAGACTACTTTGGACCGTATGTGGATTCTTCGCAAGTATTTGGCAGAT
ATGAATCCTATCGAAGCCATGGATTTCGTAAAGAGTCGTTTGGAAAATACCAAAGACAACGAAGAATTCCTGATGAGCAT
GAACTCATAA

Upstream 100 bases:

>100_bases
GAGTGCATTTCCCCCTTCTAACACATTTTTGTGTAGATTGCGCTCCTTAATTATACCATTAAAAGATTATAAAGAAATAT
ATTACTAATAACTATACTCT

Downstream 100 bases:

>100_bases
AAAATAAATCTCTTTTATTAAATGACGCAGGCTGTACCTTTTTAAGGTATGGCCTGTTTTTTATTATACTTCAATCAATA
TATCAATGCATCAATTTACT

Product: transcription termination factor Rho

Products: NA

Alternate protein names: ATP-dependent helicase Rho [H]

Number of amino acids: Translated: 669; Mature: 669

Protein sequence:

>669_residues
MYNIIQLNDKDLSELQSIAKELGIKKTDSLKKEDLVYKILDEQAIVGATQKVAAEKANESQPRKRSRINVKKDGDKVYTA
TKDKAQKLEANTPQPAAAAAETVKETAPVAVTPQTEAVAETSAEEKTPKKRGRKPGSKKVTAKTEEQPATKTKETAKEEV
KAEAPAKPTPKKAKKEETPAIPEEKEVILPELEFGSETDDFIPIEDLPSEKIELPTELFGKFEATKVETPAPVQTPAPKF
QPRQQRDQNQKYNNPRNNNYNNPRQANNNNNTTAEGEASASIPQQPERKQVEKPYEFEGILTGTGVLEIMPDGYGFLRSS
DYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVEKINGLDPGLVRDRVPFDHLTPLFPDEKFKLC
KGGYSDNLSARVVDMFSPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPETYMIMLLIDERPEEVTDMARSVNAEVIA
STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIEN
GGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNIVASSTRRDDLLLDKTTLDRMWILRKYLAD
MNPIEAMDFVKSRLENTKDNEEFLMSMNS

Sequences:

>Translated_669_residues
MYNIIQLNDKDLSELQSIAKELGIKKTDSLKKEDLVYKILDEQAIVGATQKVAAEKANESQPRKRSRINVKKDGDKVYTA
TKDKAQKLEANTPQPAAAAAETVKETAPVAVTPQTEAVAETSAEEKTPKKRGRKPGSKKVTAKTEEQPATKTKETAKEEV
KAEAPAKPTPKKAKKEETPAIPEEKEVILPELEFGSETDDFIPIEDLPSEKIELPTELFGKFEATKVETPAPVQTPAPKF
QPRQQRDQNQKYNNPRNNNYNNPRQANNNNNTTAEGEASASIPQQPERKQVEKPYEFEGILTGTGVLEIMPDGYGFLRSS
DYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVEKINGLDPGLVRDRVPFDHLTPLFPDEKFKLC
KGGYSDNLSARVVDMFSPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPETYMIMLLIDERPEEVTDMARSVNAEVIA
STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIEN
GGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNIVASSTRRDDLLLDKTTLDRMWILRKYLAD
MNPIEAMDFVKSRLENTKDNEEFLMSMNS
>Mature_669_residues
MYNIIQLNDKDLSELQSIAKELGIKKTDSLKKEDLVYKILDEQAIVGATQKVAAEKANESQPRKRSRINVKKDGDKVYTA
TKDKAQKLEANTPQPAAAAAETVKETAPVAVTPQTEAVAETSAEEKTPKKRGRKPGSKKVTAKTEEQPATKTKETAKEEV
KAEAPAKPTPKKAKKEETPAIPEEKEVILPELEFGSETDDFIPIEDLPSEKIELPTELFGKFEATKVETPAPVQTPAPKF
QPRQQRDQNQKYNNPRNNNYNNPRQANNNNNTTAEGEASASIPQQPERKQVEKPYEFEGILTGTGVLEIMPDGYGFLRSS
DYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVEKINGLDPGLVRDRVPFDHLTPLFPDEKFKLC
KGGYSDNLSARVVDMFSPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPETYMIMLLIDERPEEVTDMARSVNAEVIA
STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIEN
GGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNIVASSTRRDDLLLDKTTLDRMWILRKYLAD
MNPIEAMDFVKSRLENTKDNEEFLMSMNS

Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]

COG id: COG1158

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rho family [H]

Homologues:

Organism=Escherichia coli, GI1790217, Length=368, Percent_Identity=61.6847826086957, Blast_Score=481, Evalue=1e-137,

Paralogues:

None

Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR012340
- InterPro:   IPR011113
- InterPro:   IPR004665 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF07497 Rho_RNA_bind [H]

EC number: NA

Molecular weight: Translated: 74251; Mature: 74251

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNIIQLNDKDLSELQSIAKELGIKKTDSLKKEDLVYKILDEQAIVGATQKVAAEKANES
CCEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHCHHHHHHHHHCCCC
QPRKRSRINVKKDGDKVYTATKDKAQKLEANTPQPAAAAAETVKETAPVAVTPQTEAVAE
CCHHHHCCCEECCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHH
TSAEEKTPKKRGRKPGSKKVTAKTEEQPATKTKETAKEEVKAEAPAKPTPKKAKKEETPA
CCHHHCCCHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
IPEEKEVILPELEFGSETDDFIPIEDLPSEKIELPTELFGKFEATKVETPAPVQTPAPKF
CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
QPRQQRDQNQKYNNPRNNNYNNPRQANNNNNTTAEGEASASIPQQPERKQVEKPYEFEGI
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
LTGTGVLEIMPDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGE
EECCCEEEECCCCCCCEECCCCCCCCCCCCEEEECCEEEEEECCCCCEEECCCCCCCCCC
KYFPLVKVEKINGLDPGLVRDRVPFDHLTPLFPDEKFKLCKGGYSDNLSARVVDMFSPIG
CCCCEEEEEECCCCCCCHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCC
KGQRALIVAQPKTGKTILMKDIANAIAANHPETYMIMLLIDERPEEVTDMARSVNAEVIA
CCCEEEEEECCCCCCEEHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHH
STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGV
HHHCCHHHHHEEHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCEEECCC
DANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNL
CCHHHHCCHHHHHHHCCCCCCCCEEEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEECCCC
SNKRIFPAVNIVASSTRRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKSRLENTKDN
CCCEECHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
EEFLMSMNS
CHHHEECCC
>Mature Secondary Structure
MYNIIQLNDKDLSELQSIAKELGIKKTDSLKKEDLVYKILDEQAIVGATQKVAAEKANES
CCEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHCHHHHHHHHHCCCC
QPRKRSRINVKKDGDKVYTATKDKAQKLEANTPQPAAAAAETVKETAPVAVTPQTEAVAE
CCHHHHCCCEECCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHH
TSAEEKTPKKRGRKPGSKKVTAKTEEQPATKTKETAKEEVKAEAPAKPTPKKAKKEETPA
CCHHHCCCHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
IPEEKEVILPELEFGSETDDFIPIEDLPSEKIELPTELFGKFEATKVETPAPVQTPAPKF
CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
QPRQQRDQNQKYNNPRNNNYNNPRQANNNNNTTAEGEASASIPQQPERKQVEKPYEFEGI
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
LTGTGVLEIMPDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGE
EECCCEEEECCCCCCCEECCCCCCCCCCCCEEEECCEEEEEECCCCCEEECCCCCCCCCC
KYFPLVKVEKINGLDPGLVRDRVPFDHLTPLFPDEKFKLCKGGYSDNLSARVVDMFSPIG
CCCCEEEEEECCCCCCCHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCC
KGQRALIVAQPKTGKTILMKDIANAIAANHPETYMIMLLIDERPEEVTDMARSVNAEVIA
CCCEEEEEECCCCCCEEHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHH
STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGV
HHHCCHHHHHEEHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCEEECCC
DANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNL
CCHHHHCCHHHHHHHCCCCCCCCEEEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEECCCC
SNKRIFPAVNIVASSTRRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKSRLENTKDN
CCCEECHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
EEFLMSMNS
CHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA