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The map label for this gene is yijC [C]

Identifier: 148824241

GI number: 148824241

Start: 3422927

End: 3423667

Strand: Reverse

Name: yijC [C]

Synonym: TBFG_13066

Alternate gene names: 148824241

Gene position: 3423667-3422927 (Counterclockwise)

Preceding gene: 148824242

Following gene: 148824240

Centisome position: 77.38

GC content: 65.05

Gene sequence:

>741_bases
GTGGTCAGAATCCCCCGACCCCACCCCAGTGCAAAGCCGGGGGTGAAAGTCGACGCCCGCAGTGAACGGTGGCGTGAGCA
CCGCAAGAAGGTGCGCAACGAAATCGTCGACGCGGCGTTCCGCGCTATCGACCGGCTGGGCCCCGAGCTGAGTGTGCGCC
AAATCGCCGAAGAGGCCGGCACCGCCAAGCCCAAGATCTATCGGCATTTCACCGACAAGTCCGATTTGCTCGAGGCTATC
GGGATGCGACTGCGTGACATGCTGTGGGCGGCGATCTTCCCGTCGCTCGACTTAGCCACCGACTCTGCCCGCGAAGTTAT
CCGGCGCAGCGTCGAGGAGTACGTCAACCTCGTCGACCAGCACCCCAACGTGCTGCGGGTGTTCATTCAGGGCCGCTCGG
CAAAGCAGTCCGAGGCGACGGTACGCACCCTCAACGAAGGCCGGGAGATCACGCTGGCCATGGCCGAGATGTTCAACAAC
GAGCTGCGCGAGATGGAGCTGAATCGAGCCGCGCTCGAACTCGCCGCATTCGCGGCGTTCGGATCGGCCGCATCGGCAAC
CGAGTGGTGGTTGGGCCCCGAACCCGACAGCCCGCGCCGCATGCCGCGTGAGCAGTTCGTGGCGCATCTGACCACCATCA
TGATGGGCGTGATCGTCGGCACCGCCGAAGCGCTGGGCATCGCGGTCGACCCTGACCAACCGATCCACGACGCGGTACCC
AACAATCCCGCCGTGCGTTGA

Upstream 100 bases:

>100_bases
ACGGCTTCGCGGCGTGTCGCGTCGTGAACCTCACATTCAACCAAGCCTGGCGTGGCCAGTCTGCCCAGGTCAGCGCTTGC
AACGCGGTAAGGTGCTTGAT

Downstream 100 bases:

>100_bases
GCGCGGCGGCCGTTGACATCGCTGCGGCAATCAACAACACTCGTCATATCCGATACCCTGGGTACTGGGTATTTGCGCCG
GCGAGGGTGACTGAAGCGCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MVRIPRPHPSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYRHFTDKSDLLEAI
GMRLRDMLWAAIFPSLDLATDSAREVIRRSVEEYVNLVDQHPNVLRVFIQGRSAKQSEATVRTLNEGREITLAMAEMFNN
ELREMELNRAALELAAFAAFGSAASATEWWLGPEPDSPRRMPREQFVAHLTTIMMGVIVGTAEALGIAVDPDQPIHDAVP
NNPAVR

Sequences:

>Translated_246_residues
MVRIPRPHPSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYRHFTDKSDLLEAI
GMRLRDMLWAAIFPSLDLATDSAREVIRRSVEEYVNLVDQHPNVLRVFIQGRSAKQSEATVRTLNEGREITLAMAEMFNN
ELREMELNRAALELAAFAAFGSAASATEWWLGPEPDSPRRMPREQFVAHLTTIMMGVIVGTAEALGIAVDPDQPIHDAVP
NNPAVR
>Mature_246_residues
MVRIPRPHPSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYRHFTDKSDLLEAI
GMRLRDMLWAAIFPSLDLATDSAREVIRRSVEEYVNLVDQHPNVLRVFIQGRSAKQSEATVRTLNEGREITLAMAEMFNN
ELREMELNRAALELAAFAAFGSAASATEWWLGPEPDSPRRMPREQFVAHLTTIMMGVIVGTAEALGIAVDPDQPIHDAVP
NNPAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 27619; Mature: 27619

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRIPRPHPSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAG
CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
TAKPKIYRHFTDKSDLLEAIGMRLRDMLWAAIFPSLDLATDSAREVIRRSVEEYVNLVDQ
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
HPNVLRVFIQGRSAKQSEATVRTLNEGREITLAMAEMFNNELREMELNRAALELAAFAAF
CCHHEEHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSAASATEWWLGPEPDSPRRMPREQFVAHLTTIMMGVIVGTAEALGIAVDPDQPIHDAVP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHCCC
NNPAVR
CCCCCC
>Mature Secondary Structure
MVRIPRPHPSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAG
CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
TAKPKIYRHFTDKSDLLEAIGMRLRDMLWAAIFPSLDLATDSAREVIRRSVEEYVNLVDQ
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
HPNVLRVFIQGRSAKQSEATVRTLNEGREITLAMAEMFNNELREMELNRAALELAAFAAF
CCHHEEHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSAASATEWWLGPEPDSPRRMPREQFVAHLTTIMMGVIVGTAEALGIAVDPDQPIHDAVP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHCCC
NNPAVR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]