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The map label for this gene is pafB

Identifier: 148823310

GI number: 148823310

Start: 2370351

End: 2371349

Strand: Reverse

Name: pafB

Synonym: TBFG_12131

Alternate gene names: 148823310

Gene position: 2371349-2370351 (Counterclockwise)

Preceding gene: 148823311

Following gene: 148823309

Centisome position: 53.6

GC content: 67.27

Gene sequence:

>999_bases
ATGGCGACCTCGAAAGTCGAACGGCTGGTCAATCTCGTCATAGCCTTGCTGTCCACTCGTGGCTACATCACTGCGGAGAA
GATCAGGTCCAGCGTGGCAGGCTATTCGGACAGCCCCAGCGTTGAGGCGTTCTCCCGGATGTTCGAGCGCGACAAGAACG
AGCTGCGTGACCTCGGCATTCCGCTCGAGGTCGGCAGGGTCTCGGCGTTGGAGCCCACCGAGGGCTATCGCATCAACCGC
GACGCCTACGCCCTGTCGCCTGTCGAGCTGACCCCGGATGAGGCGGCCGCGGTAGCCGTCGCCACCCAGCTGTGGGAGTC
ACCGGAGTTGATCACCGCGACCCAGGGCGCGTTGCTGAAGCTGCGGGCCGCCGGGGTGGACGTCGATCCCTTGGATACCG
GGGCACCGGTGGCCATCGCGTCGGCGGCGGCCGTTTCGGGACTGCGCGGCTCTGAGGACGTTCTCGGAATCTTGTTGTCG
GCCATCGATTCCGGGCAGGTGGTGCAGTTCTCTCATCGATCGTCGCGCGCAGAGCCGTACACCGTTCGGACCGTCGAGCC
GTGGGGTGTGGTTACCGAGAAGGGCCGCTGGTATCTGGTCGGCCACGACCGCGACCGGGATGCAACCCGCGTCTTCCGGC
TGTCCCGGATCGGAGCGCAGGTGACGCCAATCGGGCCGGCCGGCGCAACCACCGTGCCTGCCGGTGTGGACCTACGCAGC
ATCGTGGCGCAGAAGGTGACGGAGGTGCCGACCGGTGAGCAAGCCACGGTATGGGTAGCCGAGGGTCGGGCCACCGCGTT
GCGACGTGCCGGGCGGTCCGCCGGGCCGCGACAACTTGGTGGTCGCGATGGCGAGGTGATCGAGCTTGAGATTCGATCCA
GCGACCGGCTGGCGCGTGAGATCACCGGCTATGGGGCCGACGCAATCGTGCTGCAGCCCGGGTCTCTGCGCGACGATGTG
CTGGCCCGACTACGCGCGCAAGCCGGAGCACTGGCATGA

Upstream 100 bases:

>100_bases
AACTCAACGACCAGGCGCAGCGCACCGTGCTGTGCAAAGACCCGTTCCGGGCGGTCGATGAGCGGGTTAAGCGGCTGATC
GCGAGCATGTAGCACCACCA

Downstream 100 bases:

>100_bases
GCGCCCTGTCCACCCGGCTGGTGCGGCTGCTCAACATGGTGCCGTACTTCCAGGCCAACCCCCGGATCACCCGCGCCGAG
GCCGCCGCCGAGCTGGGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEVGRVSALEPTEGYRINR
DAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLS
AIDSGQVVQFSHRSSRAEPYTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS
IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGYGADAIVLQPGSLRDDV
LARLRAQAGALA

Sequences:

>Translated_332_residues
MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEVGRVSALEPTEGYRINR
DAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLS
AIDSGQVVQFSHRSSRAEPYTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS
IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGYGADAIVLQPGSLRDDV
LARLRAQAGALA
>Mature_331_residues
ATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEVGRVSALEPTEGYRINRD
AYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSA
IDSGQVVQFSHRSSRAEPYTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRSI
VAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGYGADAIVLQPGSLRDDVL
ARLRAQAGALA

Specific function: Does not seem to be involved in pupylation or substrate degradation

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAFB_MYCBO (P64942)

Other databases:

- EMBL:   BX248341
- RefSeq:   NP_855772.1
- EnsemblBacteria:   EBMYCT00000015338
- GeneID:   1091146
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb2123c
- GeneTree:   EBGT00050000016808
- HOGENOM:   HBG481015
- OMA:   MFERDKD
- ProtClustDB:   CLSK791626
- BioCyc:   MBOV233413:MB2123C-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35300; Mature: 35169

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI
CCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK
CEECCCEECCCCCCCEEECCCCEEECCCEECCCHHHHHHHHHHHHCCCCEEEECCCCEEE
LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY
EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCE
TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS
EEEEECCCCCEECCCCEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHH
IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE
HHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCHHCCCCCCCEEEEEECCCHHHHHH
ITGYGADAIVLQPGSLRDDVLARLRAQAGALA
HHCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI
CHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK
CEECCCEECCCCCCCEEECCCCEEECCCEECCCHHHHHHHHHHHHCCCCEEEECCCCEEE
LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY
EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCE
TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS
EEEEECCCCCEECCCCEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHH
IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE
HHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCHHCCCCCCCEEEEEECCCHHHHHH
ITGYGADAIVLQPGSLRDDVLARLRAQAGALA
HHCCCCCEEEECCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972