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The map label for this gene is jag [H]

Identifier: 148663787

GI number: 148663787

Start: 4416779

End: 4417342

Strand: Reverse

Name: jag [H]

Synonym: MRA_3959

Alternate gene names: 148663787

Gene position: 4417342-4416779 (Counterclockwise)

Preceding gene: 148663788

Following gene: 148663786

Centisome position: 99.94

GC content: 64.18

Gene sequence:

>564_bases
ATGGCCGACGCTGACACCACCGACTTCGACGTCGACGCAGAAGCACCGGGTGGAGGCGTCCGGGAGGACACGGCGACGGA
TGCTGACGAGGCCGACGATCAAGAAGAGAGATTGGTCGCCGAGGGCGAGATTGCAGGCGACTACCTGGAAGAGTTATTGG
ACGTGTTGGACTTCGATGGCGACATCGACCTCGATGTCGAAGGCAATCGTGCGGTGGTGAGCATCGACGGCAGTGACGAC
CTGAACAAGTTGGTCGGGCGCGGGGGCGAGGTGCTCGACGCTCTGCAGGAACTCACCCGGTTGGCGGTGCATCAGAAGAC
CGGTGTGCGGAGCCGGTTGATGCTAGACATCGCGAGGTGGCGACGGCGGCGCCGGGAGGAATTGGCGGCGCTGGCCGACG
AGGTGGCGCGGCGAGTGGCCGAAACCGGTGACCGCGAGGAACTCGTTCCAATGACGCCGTTCGAACGGAAGATCGTCCAC
GATGCGGTTGCAGCGGTGCCAGGTGTGCACAGCGAAAGCGAAGGCGTGGAGCCAGAACGCCGAGTCGTTGTGCTCCGCGA
CTAG

Upstream 100 bases:

>100_bases
GGGTGCGACCGAAAAAACGCAAACGTTGACAATCCTTCCGGGCAGCCGGGCAGGCGGTCCCACAAACACAACCCGCCTGC
AGACGAGGGGAGAGCAAGCC

Downstream 100 bases:

>100_bases
CTCGCGAGCCAGCGGCTCCGACCGACGCCGCAGTAAGCGATGCGTGGCCGAGCGGCTGGGCCAGCGTCTCGAGAGCGGAG
AATGTTTCACGTGAAACATG

Product: putative Jag protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDD
LNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVH
DAVAAVPGVHSESEGVEPERRVVVLRD

Sequences:

>Translated_187_residues
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDD
LNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVH
DAVAAVPGVHSESEGVEPERRVVVLRD
>Mature_186_residues
ADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDL
NKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHD
AVAAVPGVHSESEGVEPERRVVVLRD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 20559; Mature: 20428

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW
CEEEEECCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
RVVVLRD
CEEEECC
>Mature Secondary Structure 
ADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW
CEEEEECCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
RVVVLRD
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]